Conservation of cofitness between HER17_RS10965 and HER17_RS04350 in Pectobacterium carotovorum WPP14

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS10965 acyl-CoA thioester hydrolase YciA 1.0 HER17_RS04350 RNA polymerase sigma factor RpoS 0.68 20
Dickeya dianthicola ME23 0.89 DZA65_RS10910 acyl-CoA thioester hydrolase YciA 0.95 DZA65_RS18020 RNA polymerase sigma factor RpoS low > 75
Dickeya dadantii 3937 0.89 DDA3937_RS10430 acyl-CoA thioester hydrolase YciA 0.95 DDA3937_RS16875 RNA polymerase sigma factor RpoS
Dickeya dianthicola 67-19 0.88 HGI48_RS10435 acyl-CoA thioester hydrolase YciA 0.95 HGI48_RS16945 RNA polymerase sigma factor RpoS low > 71
Rahnella sp. WP5 0.85 EX31_RS10010 acyl-CoA thioester hydrolase YciA 0.92 EX31_RS07825 RNA polymerase sigma factor RpoS low > 89
Serratia liquefaciens MT49 0.84 IAI46_14085 acyl-CoA thioester hydrolase YciA 0.93 IAI46_03790 RNA polymerase sigma factor RpoS low > 86
Enterobacter asburiae PDN3 0.80 EX28DRAFT_0923 Acyl-CoA hydrolase 0.92 EX28DRAFT_2837 RNA polymerase, sigma 38 subunit, RpoS low > 76
Pantoea sp. MT58 0.80 IAI47_09135 acyl-CoA thioester hydrolase YciA 0.93 IAI47_04235 RNA polymerase sigma factor RpoS low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_02575 putative acyl-CoA thioester hydrolase 0.92 MPMX20_03627 RNA polymerase sigma factor RpoS low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS11790 acyl-CoA thioesterase 0.92 BWI76_RS22645 RNA polymerase sigma factor RpoS low > 92
Escherichia coli ECRC62 0.79 BNILDI_18515 yciA acyl-CoA thioester hydrolase YciA 0.92 BNILDI_10860 rpoS RNA polymerase sigma factor RpoS low > 75
Escherichia fergusonii Becca 0.79 EFB2_02672 putative acyl-CoA thioester hydrolase 0.92 EFB2_01169 RNA polymerase sigma factor RpoS low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_02430 putative acyl-CoA thioester hydrolase 0.92 OHPLBJKB_00992 RNA polymerase sigma factor RpoS low > 73
Escherichia coli BL21 0.79 ECD_01227 acyl-CoA esterase 0.92 ECD_02591 RNA polymerase, sigma S (sigma 38) factor low > 61
Escherichia coli BW25113 0.79 b1253 yciA predicted hydrolase (NCBI) 0.92 b2741 rpoS RNA polymerase sigma factor (NCBI) low > 76
Escherichia coli ECOR27 0.79 NOLOHH_20370 yciA acyl-CoA thioester hydrolase YciA 0.92 NOLOHH_12310 rpoS RNA polymerase sigma factor RpoS low > 75
Escherichia coli ECOR38 0.79 HEPCGN_25145 yciA acyl-CoA thioester hydrolase YciA 0.92 HEPCGN_19675 rpoS RNA polymerase sigma factor RpoS low > 87
Escherichia coli ECRC101 0.79 MCAODC_21580 yciA acyl-CoA thioester hydrolase YciA 0.92 MCAODC_11020 rpoS RNA polymerase sigma factor RpoS low > 87
Escherichia coli ECRC102 0.79 NIAGMN_27555 yciA acyl-CoA thioester hydrolase YciA 0.92 NIAGMN_18265 rpoS RNA polymerase sigma factor RpoS
Escherichia coli ECRC98 0.79 JDDGAC_05895 yciA acyl-CoA thioester hydrolase YciA 0.92 JDDGAC_24160 rpoS RNA polymerase sigma factor RpoS low > 86
Escherichia coli ECRC100 0.79 OKFHMN_28680 yciA acyl-CoA thioester hydrolase YciA 0.87 OKFHMN_20495 rpoS RNA polymerase sigma factor RpoS low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF2735 Acyl-CoA thioesterase YciA, involved in membrane biogenesis 0.92 GFF4788 RNA polymerase sigma factor RpoS low > 78
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_08560 acyl-CoA thioester hydrolase YciA 0.69 CSW01_02835 RNA polymerase sigma factor RpoS low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_5043 Thioesterase superfamily 0.63 Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS low > 86
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_5043 Thioesterase superfamily 0.63 Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS 0.46 2
Pseudomonas sp. RS175 0.44 PFR28_04491 putative acyl-CoA thioester hydrolase 0.63 PFR28_00427 RNA polymerase sigma factor RpoS low > 88
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_11055 long-chain acyl-CoA thioester hydrolase 0.63 AO356_05885 RNA polymerase sigma factor RpoS low > 104
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_4077 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.63 Pf6N2E2_3037 RNA polymerase sigma factor RpoS low > 103
Pseudomonas fluorescens SBW25 0.43 PFLU_RS29780 acyl-CoA thioesterase 0.63 PFLU_RS06430 RNA polymerase sigma factor RpoS low > 109
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS29780 acyl-CoA thioesterase 0.63 PFLU_RS06430 RNA polymerase sigma factor RpoS 0.25 106
Pseudomonas simiae WCS417 0.43 PS417_28095 long-chain acyl-CoA thioester hydrolase 0.63 PS417_06365 RNA polymerase sigma factor
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_09915 long-chain acyl-CoA thioester hydrolase 0.63 AO353_16615 RNA polymerase sigma factor RpoS low > 101
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_2032 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.63 Pf1N1B4_3115 RNA polymerase sigma factor RpoS
Marinobacter adhaerens HP15 0.43 HP15_3390 thioesterase superfamily protein 0.64 HP15_1283 RNA polymerase, sigma 70 subunit, RpoD family low > 73
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_751 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.63 PfGW456L13_4674 RNA polymerase sigma factor RpoS low > 87
Pseudomonas putida KT2440 0.43 PP_5331 Long-chain acyl-CoA thioester hydrolase 0.63 PP_1623 RNA polymerase, sigma S (sigma 38) factor low > 96
Dechlorosoma suillum PS 0.43 Dsui_0322 acyl-CoA hydrolase 0.45 Dsui_1971 RNA polymerase sigma factor RpoS low > 51
Pseudomonas stutzeri RCH2 0.43 Psest_0218 Acyl-CoA hydrolase 0.62 Psest_2806 RNA polymerase sigma factor RpoS low > 67
Pseudomonas sp. S08-1 0.43 OH686_13400 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.64 OH686_18185 RNA polymerase sigma factor RpoS low > 80
Variovorax sp. OAS795 0.42 ABID97_RS05905 acyl-CoA thioesterase 0.32 ABID97_RS10730 sigma-70 family RNA polymerase sigma factor low > 91
Variovorax sp. SCN45 0.42 GFF4599 Acyl-CoA hydrolase (EC 3.1.2.20) 0.33 GFF2842 RNA polymerase sigma factor RpoS low > 127
Ralstonia solanacearum GMI1000 0.41 RS_RS02365 acyl-CoA thioesterase 0.42 RS_RS06045 RNA polymerase sigma factor RpoS low > 80
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS02095 acyl-CoA thioesterase 0.38 QEN71_RS22240 RNA polymerase sigma factor RpoS low > 153
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS19275 acyl-CoA hydrolase 0.44 HSERO_RS14830 RNA polymerase sigma factor RpoS low > 78

Not shown: 27 genomes with orthologs for HER17_RS10965 only; 9 genomes with orthologs for HER17_RS04350 only