Conservation of cofitness between HER17_RS04205 and HER17_RS03235 in Pectobacterium carotovorum WPP14

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04205 6-carboxytetrahydropterin synthase QueD 1.0 HER17_RS03235 protein transport protein HofC 0.56 14
Dickeya dadantii 3937 0.94 DDA3937_RS16965 6-carboxytetrahydropterin synthase QueD 0.51 DDA3937_RS17970 protein transport protein HofC low > 74
Dickeya dianthicola ME23 0.93 DZA65_RS18105 6-carboxytetrahydropterin synthase QueD 0.51 DZA65_RS19050 protein transport protein HofC low > 75
Dickeya dianthicola 67-19 0.93 HGI48_RS17030 6-carboxytetrahydropterin synthase QueD 0.51 HGI48_RS17905 protein transport protein HofC low > 71
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2854 queuosine biosynthesis protein QueD 0.30 EX28DRAFT_3699 Type II secretory pathway, component PulF low > 76
Escherichia fergusonii Becca 0.89 EFB2_01152 6-carboxy-5,6,7,8-tetrahydropterin synthase 0.34 EFB2_03943 Type II secretion system protein F low > 86
Escherichia coli ECRC102 0.89 NIAGMN_18135 queD 6-carboxytetrahydropterin synthase QueD 0.35 NIAGMN_08395 hofC protein transport protein HofC
Escherichia coli BL21 0.89 ECD_02610 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) 0.35 ECD_00105 assembly protein in type IV pilin biogenesis, transmembrane protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.89 OHPLBJKB_00968 6-carboxy-5,6,7,8-tetrahydropterin synthase 0.35 OHPLBJKB_03555 Type II secretion system protein F low > 73
Escherichia coli Nissle 1917 0.89 ECOLIN_RS15415 6-carboxytetrahydropterin synthase QueD 0.34 ECOLIN_RS00565 protein transport protein HofC low > 55
Escherichia coli ECRC100 0.89 OKFHMN_20365 queD 6-carboxytetrahydropterin synthase QueD 0.35 OKFHMN_10545 hofC protein transport protein HofC low > 80
Escherichia coli ECRC98 0.89 JDDGAC_24030 queD 6-carboxytetrahydropterin synthase QueD 0.35 JDDGAC_14140 hofC protein transport protein HofC 0.51 44
Escherichia coli ECRC101 0.89 MCAODC_10890 queD 6-carboxytetrahydropterin synthase QueD 0.35 MCAODC_01060 hofC protein transport protein HofC low > 87
Enterobacter sp. TBS_079 0.89 MPMX20_03644 6-carboxy-5,6,7,8-tetrahydropterin synthase 0.32 MPMX20_00797 Type II secretion system protein F low > 85
Escherichia coli BW25113 0.89 b2765 ygcM 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) 0.35 b0106 hofC assembly protein in type IV pilin biogenesis, transmembrane protein (NCBI) low > 76
Escherichia coli ECRC62 0.89 BNILDI_10730 queD 6-carboxytetrahydropterin synthase QueD 0.35 BNILDI_08720 hofC protein transport protein HofC low > 75
Escherichia coli ECOR27 0.89 NOLOHH_12180 queD 6-carboxytetrahydropterin synthase QueD 0.35 NOLOHH_02890 hofC protein transport protein HofC low > 75
Escherichia coli ECRC99 0.89 KEDOAH_07760 queD 6-carboxytetrahydropterin synthase QueD 0.35 KEDOAH_17610 hofC protein transport protein HofC
Klebsiella michiganensis M5al 0.89 BWI76_RS22775 6-carboxytetrahydropterin synthase QueD 0.36 BWI76_RS04830 type IV pilin biogenesis protein low > 92
Escherichia coli ECOR38 0.88 HEPCGN_19100 queD 6-carboxytetrahydropterin synthase QueD 0.34 HEPCGN_08525 hofC protein transport protein HofC low > 87
Serratia liquefaciens MT49 0.88 IAI46_03680 6-carboxytetrahydropterin synthase QueD 0.47 IAI46_03515 protein transport protein HofC low > 86
Pantoea sp. MT58 0.86 IAI47_04145 6-carboxytetrahydropterin synthase QueD 0.40 IAI47_15860 protein transport protein HofC low > 76
Rahnella sp. WP5 0.86 EX31_RS07915 6-carboxytetrahydropterin synthase QueD 0.42 EX31_RS03530 protein transport protein HofC low > 89
Erwinia tracheiphila SCR3 0.86 LU632_RS06395 queD 6-carboxytetrahydropterin synthase QueD 0.41 LU632_RS03025 hofC protein transport protein HofC low > 74
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_06560 6-carboxytetrahydropterin synthase QueD 0.27 CSW01_12280 type IV pilin assembly protein PilC low > 62
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_110 Queuosine biosynthesis QueD, PTPS-I 0.29 Pf1N1B4_2841 Type IV fimbrial assembly protein PilC low > 87
Pseudomonas sp. RS175 0.75 PFR28_02851 6-carboxy-5,6,7,8-tetrahydropterin synthase 0.25 PFR28_03732 Type II secretion system protein F low > 88
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_37 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I 0.25 Pf6N2E2_5141 Type IV fimbrial assembly protein PilC low > 103
Pseudomonas fluorescens SBW25 0.75 PFLU_RS10415 6-carboxytetrahydropterin synthase QueD 0.25 PFLU_RS03945 type II secretion system F family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS10415 6-carboxytetrahydropterin synthase QueD 0.25 PFLU_RS03945 type II secretion system F family protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_21260 6-carboxy-5,6,7,8-tetrahydropterin synthase 0.26 AO356_16010 type II secretion system protein F low > 104
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_19760 6-carboxy-5,6,7,8-tetrahydropterin synthase 0.27 AO353_14325 type II secretion system protein F low > 101
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_2447 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I 0.28 PfGW456L13_1509 Type IV fimbrial assembly protein PilC low > 87
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_3215 6-pyruvoyl tetrahydropterin synthase and hypothetical protein 0.28 Psyr_0797 type II secretion system protein
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_3215 6-pyruvoyl tetrahydropterin synthase and hypothetical protein 0.28 Psyr_0797 type II secretion system protein
Lysobacter sp. OAE881 0.71 ABIE51_RS17950 6-carboxytetrahydropterin synthase QueD 0.27 ABIE51_RS04810 type II secretion system F family protein low > 62
Pseudomonas stutzeri RCH2 0.70 Psest_2010 queuosine biosynthesis protein QueD 0.27 Psest_3287 Type II secretory pathway, component PulF
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.4528.1 hypothetical protein 0.27 Xcc-8004.1346.1 Type IV fimbrial assembly protein PilC low > 74
Pseudomonas sp. S08-1 0.65 OH686_00030 queuosine biosynthesis protein QueD 0.27 OH686_16500 Type IV fimbrial assembly protein PilC low > 80
Dyella japonica UNC79MFTsu3.2 0.61 ABZR86_RS13650 6-carboxytetrahydropterin synthase QueD 0.24 ABZR86_RS10045 type II secretion system F family protein low > 74

Not shown: 21 genomes with orthologs for HER17_RS04205 only; 12 genomes with orthologs for HER17_RS03235 only