Conservation of cofitness between GFF4076 and GFF855 in Sphingobium sp. HT1-2

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF4076 Two-component transcriptional response regulator, LuxR family 1.0 GFF855 Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site 0.67 18
Sphingomonas koreensis DSMZ 15582 0.90 Ga0059261_1369 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.83 Ga0059261_0546 Choline dehydrogenase and related flavoproteins low > 68
Agrobacterium fabrum C58 0.72 Atu0970 two component response regulator 0.45 Atu4377 oxidoreductase — —
Azospirillum sp. SherDot2 0.71 MPMX19_04078 Virulence transcriptional regulatory protein PhoP 0.14 MPMX19_03568 2-methyl-1,2-propanediol dehydrogenase low > 112
Azospirillum brasilense Sp245 0.69 AZOBR_RS18790 transcriptional regulator 0.14 AZOBR_RS31645 2-keto-gluconate dehydrogenase low > 97
Xanthobacter sp. DMC5 0.66 GFF3491 Transcriptional regulatory protein PhoP 0.14 GFF4705 6'''-hydroxyparomomycin C oxidase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.63 A4249_RS15665 response regulator transcription factor 0.11 A4249_RS02350 GMC family oxidoreductase low > 48
Caulobacter crescentus NA1000 0.61 CCNA_02854 two-component response regulator 0.43 CCNA_01706 lacA: subunit of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) (from data) low > 66
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_02854 two-component response regulator 0.43 CCNA_01706 BetA-family choline dehydrogenase low > 67
Shewanella loihica PV-4 0.53 Shew_2695 two component transcriptional regulator (RefSeq) 0.12 Shew_2982 glucose-methanol-choline oxidoreductase (RefSeq) low > 60
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS17390 response regulator transcription factor 0.13 LRK53_RS00340 GMC family oxidoreductase — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01421 Transcriptional regulatory protein PhoP 0.46 MIT1002_00368 6'''-hydroxyparomomycin C oxidase low > 70
Rhodanobacter denitrificans MT42 0.51 LRK55_RS05740 response regulator transcription factor 0.12 LRK55_RS07830 GMC family oxidoreductase — —
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS05985 response regulator transcription factor 0.12 LRK54_RS08080 GMC family oxidoreductase low > 59
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_00635 ompR DNA-binding response regulator 0.12 OKGIIK_14905 Choline dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS18360 response regulator transcription factor 0.41 ABZR86_RS01670 GMC family oxidoreductase low > 74
Pseudomonas aeruginosa PA14 0.48 IKLFDK_13340 two-component system response regulator CarR 0.11 IKLFDK_11115 GMC family oxidoreductase low > 100
Pseudomonas stutzeri RCH2 0.47 Psest_3533 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.14 Psest_1430 Choline dehydrogenase and related flavoproteins low > 67
Pseudomonas sp. DMC3 0.47 GFF1365 Transcriptional regulatory protein QseB 0.10 GFF658 Gluconate 2-dehydrogenase flavoprotein low > 89
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_19775 transcriptional regulator 0.10 AO353_10795 GMC family oxidoreductase low > 101
Pseudomonas lactucae CFBP13502 0.46 GEMAOFIL_02165 Transcriptional regulatory protein QseB 0.10 GEMAOFIL_00257 Gluconate 2-dehydrogenase flavoprotein low > 93
Pseudomonas putida KT2440 0.46 PP_2347 DNA-binding response regulator 0.11 PP_3383 gluconate 2-dehydrogenase flavoprotein subunit low > 96
Pseudomonas sp. BP01 0.46 JOY50_RS10885 response regulator transcription factor 0.14 JOY50_RS13450 GMC family oxidoreductase — —
Pseudomonas fluorescens SBW25 0.46 PFLU_RS10435 response regulator transcription factor 0.10 PFLU_RS00260 GMC family oxidoreductase low > 109
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS10435 response regulator transcription factor 0.10 PFLU_RS00260 GMC family oxidoreductase low > 109
Pseudomonas simiae WCS417 0.46 PS417_10270 transcriptional regulator 0.10 PS417_00265 GMC family oxidoreductase low > 88
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_21280 transcriptional regulator 0.09 AO356_10655 dehydrogenase 0.30 34
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_41 Two-component system response regulator QseB 0.11 Pf6N2E2_4406 2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, flavoprotein low > 103
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS21985 transcriptional regulator 0.12 HSERO_RS08310 choline dehydrogenase low > 78
Rahnella sp. WP5 0.43 EX31_RS08605 two-component system response regulator PmrA 0.14 EX31_RS20600 GMC family oxidoreductase low > 89
Klebsiella pneumoniae MKP103 0.41 KDGMDA_05180 two-component system response regulator QseB 0.09 KDGMDA_23880 GMC family oxidoreductase low > 95
Serratia liquefaciens MT49 0.41 IAI46_10395 two-component system response regulator PhoP 0.13 IAI46_11960 GMC family oxidoreductase low > 86
Ralstonia solanacearum PSI07 0.40 RPSI07_RS08050 DNA-binding response regulator 0.12 RPSI07_RS20130 GMC family oxidoreductase low > 81
Echinicola vietnamensis KMM 6221, DSM 17526 0.40 Echvi_4209 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.44 Echvi_1847 periplasmic glucoside 3-dehydrogenase (lacA subunit) (EC 1.1.99.13) (from data) low > 79

Not shown: 51 genomes with orthologs for GFF4076 only; 17 genomes with orthologs for GFF855 only