Conservation of cofitness between PS417_24085 and PS417_04055 in Pseudomonas simiae WCS417

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_24085 protein RnfH 1.0 PS417_04055 peptide transporter 0.25 1
Pseudomonas fluorescens SBW25 0.76 PFLU_RS25925 RnfH family protein 0.99 PFLU_RS04095 ABC transporter permease subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS25925 RnfH family protein 0.99 PFLU_RS04095 ABC transporter permease subunit low > 109
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_1181 UPF0125 protein yfjF 0.96 Pf1N1B4_1125 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) low > 87
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_05675 protein RnfH 0.97 AO353_05400 peptide transporter low > 101
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_5109 UPF0125 protein yfjF 0.98 PfGW456L13_5056 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) low > 87
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_07525 protein RnfH 0.97 AO356_07265 peptide transporter — —
Pseudomonas sp. S08-1 0.50 OH686_17035 UPF0125 protein RatB 0.90 OH686_08710 Dipeptide ABC transporter, permease protein DppC low > 80
Dechlorosoma suillum PS 0.44 Dsui_2673 hypothetical protein 0.34 Dsui_0413 ABC-type dipeptide/oligopeptide/nickel transport system, permease component — —
Marinobacter adhaerens HP15 0.43 HP15_3087 protein belonging to uncharacterized protein family UPF0125 0.33 HP15_2805 permease protein, ABC-type oligopeptide transporter low > 73
Kangiella aquimarina DSM 16071 0.41 B158DRAFT_0971 Uncharacterized protein conserved in bacteria 0.48 B158DRAFT_1045 ABC-type antimicrobial peptide transport system, permease component — —
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_04385 RnfH family protein 0.38 CSW01_08455 peptide ABC transporter permease SapC — —
Erwinia tracheiphila SCR3 0.41 LU632_RS17015 RnfH family protein 0.56 LU632_RS00275 dppC dipeptide ABC transporter permease DppC low > 74
Dickeya dianthicola ME23 0.41 DZA65_RS04225 RnfH family protein 0.59 DZA65_RS21910 dipeptide ABC transporter permease DppC low > 75
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS12030 protein RnfH 0.65 BPHYT_RS18680 peptide ABC transporter — —
Rahnella sp. WP5 0.40 EX31_RS21750 RnfH family protein 0.56 EX31_RS05505 dipeptide ABC transporter permease DppC low > 89
Dickeya dadantii 3937 0.40 DDA3937_RS04315 RnfH family protein 0.59 DDA3937_RS00470 dipeptide ABC transporter permease DppC low > 74
Enterobacter asburiae PDN3 0.40 EX28DRAFT_2721 Uncharacterized protein conserved in bacteria 0.56 EX28DRAFT_3802 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components low > 76
Dickeya dianthicola 67-19 0.40 HGI48_RS04310 RnfH family protein 0.59 HGI48_RS20915 dipeptide ABC transporter permease DppC — —
Enterobacter sp. TBS_079 0.40 MPMX20_03488 Persistence and stress-resistance antitoxin PasI 0.55 MPMX20_00192 Dipeptide transport system permease protein DppC low > 85
Pantoea sp. MT58 0.39 IAI47_04800 RnfH family protein 0.57 IAI47_18640 dipeptide ABC transporter permease DppC low > 76
Paraburkholderia graminis OAS925 0.38 ABIE53_002480 putative ubiquitin-RnfH superfamily antitoxin RatB of RatAB toxin-antitoxin module 0.64 ABIE53_000056 dipeptide transport system permease protein 0.16 68
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS11010 RnfH 0.38 HSERO_RS09205 glutathione ABC transporter permease low > 78
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF4160 UPF0125 protein yfjF 0.56 GFF477 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) low > 78
Escherichia coli ECRC62 0.37 BNILDI_11610 rnfH RnfH family protein 0.56 BNILDI_03505 dppC dipeptide ABC transporter permease DppC — —
Escherichia coli BW25113 0.37 b2618 b2618 orf, hypothetical protein (VIMSS) 0.56 b3542 dppC dipeptide transporter (NCBI) low > 76
Escherichia coli ECRC101 0.37 MCAODC_11660 rnfH RnfH family protein 0.56 MCAODC_06625 dppC dipeptide ABC transporter permease DppC — —
Escherichia coli ECOR27 0.37 NOLOHH_12805 rnfH RnfH family protein 0.56 NOLOHH_08055 dppC dipeptide ABC transporter permease DppC — —
Escherichia coli BL21 0.37 ECD_02506 UPF0125 family protein 0.56 ECD_03393 dipeptide/heme ABC transporter permease low > 60
Escherichia coli ECRC98 0.37 JDDGAC_24800 rnfH RnfH family protein 0.56 JDDGAC_19740 dppC dipeptide ABC transporter permease DppC — —
Escherichia coli ECRC102 0.37 NIAGMN_18905 rnfH RnfH family protein 0.56 NIAGMN_13870 dppC dipeptide ABC transporter permease DppC — —
Escherichia coli ECRC99 0.37 KEDOAH_07085 rnfH RnfH family protein 0.56 KEDOAH_12040 dppC dipeptide ABC transporter permease DppC — —
Escherichia coli ECRC101 0.37 OKFHMN_21135 rnfH RnfH family protein 0.56 OKFHMN_16110 dppC dipeptide ABC transporter permease DppC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01089 hypothetical protein 0.56 OHPLBJKB_00164 Dipeptide transport system permease protein DppC low > 73
Escherichia fergusonii Becca 0.37 EFB2_01275 Persistence and stress-resistance antitoxin PasI 0.56 EFB2_00265 Dipeptide transport system permease protein DppC low > 86
Escherichia coli Nissle 1917 0.37 ECOLIN_RS14785 RnfH family protein 0.56 ECOLIN_RS20265 dipeptide ABC transporter permease DppC low > 52
Escherichia coli ECOR38 0.37 HEPCGN_20255 rnfH RnfH family protein 0.56 HEPCGN_14975 dppC dipeptide ABC transporter permease DppC low > 85
Pectobacterium carotovorum WPP14 0.37 HER17_RS17430 RnfH family protein 0.58 HER17_RS00230 dipeptide ABC transporter permease DppC low > 75
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_00632 hypothetical protein 0.64 H281DRAFT_05804 dipeptide transport system permease protein — —
Serratia liquefaciens MT49 0.36 IAI46_19645 RnfH family protein 0.56 IAI46_00485 dipeptide ABC transporter permease DppC low > 86
Klebsiella michiganensis M5al 0.36 BWI76_RS21570 RnfH family protein 0.56 BWI76_RS26875 dipeptide ABC transporter permease DppC low > 92

Not shown: 7 genomes with orthologs for PS417_24085 only; 32 genomes with orthologs for PS417_04055 only