Conservation of cofitness between GFF1884 and GFF5516 in Variovorax sp. SCN45

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF1884 Gluconokinase (EC 2.7.1.12) 1.0 GFF5516 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.51 1
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26905 gluconokinase 0.31 QEN71_RS02470 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 153
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS16720 Gluconokinase (EC 2.7.1.12) (from data) 0.32 BPHYT_RS16225 D-alanyl-D-alanine carboxypeptidase low > 109
Pectobacterium carotovorum WPP14 0.42 HER17_RS01455 gluconokinase 0.15 HER17_RS18335 serine-type D-Ala-D-Ala carboxypeptidase low > 75
Dickeya dadantii 3937 0.41 DDA3937_RS19780 gluconokinase 0.15 DDA3937_RS03010 serine-type D-Ala-D-Ala carboxypeptidase low > 74
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS11355 gluconate kinase 0.34 RALBFv3_RS12220 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase — —
Dickeya dianthicola 67-19 0.41 HGI48_RS19895 gluconokinase 0.15 HGI48_RS03180 serine-type D-Ala-D-Ala carboxypeptidase — —
Ralstonia solanacearum UW163 0.41 UW163_RS02230 gluconate kinase 0.34 UW163_RS01390 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase — —
Dickeya dianthicola ME23 0.41 DZA65_RS20965 gluconokinase 0.15 DZA65_RS03175 serine-type D-Ala-D-Ala carboxypeptidase low > 75
Erwinia tracheiphila SCR3 0.41 LU632_RS19165 gntK gluconokinase 0.13 LU632_RS21170 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 74
Ralstonia solanacearum PSI07 0.40 RPSI07_RS21850 gluconate kinase 0.34 RPSI07_RS21110 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 81
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS07320 gluconokinase 0.33 ABZR87_RS08110 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 80
Pantoea sp. MT58 0.40 IAI47_01655 gluconokinase 0.11 IAI47_17085 serine-type D-Ala-D-Ala carboxypeptidase low > 76
Ralstonia solanacearum GMI1000 0.40 RS_RS02185 gluconate kinase 0.34 RS_RS02925 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 80
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_01475 gluconate kinase 0.07 CSW01_03320 serine-type D-Ala-D-Ala carboxypeptidase low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF956 Gluconokinase (EC 2.7.1.12) 0.14 GFF2924 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Klebsiella michiganensis M5al 0.39 BWI76_RS26240 gluconokinase 0.13 BWI76_RS25165 serine-type D-Ala-D-Ala carboxypeptidase — —
Pseudomonas putida KT2440 0.39 PP_3416 D-gluconate kinase 0.31 PP_2098 D-alanyl-D-alanine carboxypeptidase — —
Serratia liquefaciens MT49 0.39 IAI46_23165 gluconokinase 0.13 IAI46_01875 serine-type D-Ala-D-Ala carboxypeptidase low > 86
Enterobacter asburiae PDN3 0.39 EX28DRAFT_4273 carbohydrate kinase, thermoresistant glucokinase family 0.13 EX28DRAFT_3234 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family low > 76
Enterobacter sp. TBS_079 0.38 MPMX20_04318 Thermoresistant gluconokinase 0.13 MPMX20_04086 D-alanyl-D-alanine carboxypeptidase DacB low > 85
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS23590 gluconokinase 0.31 PFLU_RS22535 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 109
Escherichia coli Nissle 1917 0.38 ECOLIN_RS19670 gluconokinase 0.14 ECOLIN_RS18325 serine-type D-Ala-D-Ala carboxypeptidase low > 55
Pseudomonas simiae WCS417 0.38 PS417_21985 gluconokinase 0.30 PS417_20920 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas fluorescens SBW25 0.38 PFLU_RS23590 gluconokinase 0.31 PFLU_RS22535 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 109
Escherichia coli ECRC102 0.38 NIAGMN_14610 gntK gluconokinase 0.14 NIAGMN_15800 dacB serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC101 0.38 MCAODC_07370 gntK gluconokinase 0.14 MCAODC_08560 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 87
Escherichia coli ECRC98 0.38 JDDGAC_20470 gntK gluconokinase 0.14 JDDGAC_21665 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 86
Escherichia coli ECRC99 0.38 KEDOAH_11300 gntK gluconokinase 0.14 KEDOAH_10110 dacB serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC62 0.38 BNILDI_02865 gntK gluconokinase 0.14 BNILDI_01695 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 75
Escherichia coli ECRC100 0.38 OKFHMN_16840 gntK gluconokinase 0.14 OKFHMN_18040 dacB serine-type D-Ala-D-Ala carboxypeptidase low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_3337 gluconate kinase, SKI family 0.31 Psyr_2111 Peptidase S13, D-Ala-D-Ala carboxypeptidase C low > 86
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_3337 gluconate kinase, SKI family 0.31 Psyr_2111 Peptidase S13, D-Ala-D-Ala carboxypeptidase C low > 86
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS06130 Gluconokinase (EC 2.7.1.12) (from data) 0.35 RR42_RS03245 D-alanyl-D-alanine carboxypeptidase low > 128
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_557 Gluconokinase (EC 2.7.1.12) 0.29 Pf1N1B4_3846 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_05060 gluconokinase 0.31 AO356_02595 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_2864 Gluconokinase (EC 2.7.1.12) 0.31 Pf6N2E2_2344 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 103
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_1926 Gluconokinase (EC 2.7.1.12) 0.29 PfGW456L13_4091 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas sp. RS175 0.35 PFR28_00594 Gluconokinase 0.31 PFR28_01057 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_03250 gluconokinase 0.30 AO353_00765 D-alanyl-D-alanine carboxypeptidase low > 101
Pseudomonas sp. S08-1 0.32 OH686_16245 Gluconokinase 0.31 OH686_03105 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase low > 80

Not shown: 10 genomes with orthologs for GFF1884 only; 26 genomes with orthologs for GFF5516 only