Conservation of cofitness between GFF516 and GFF5509 in Hydrogenophaga sp. GW460-11-11-14-LB1

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF516 Acyl-CoA hydrolase (EC 3.1.2.20) 1.0 GFF5509 Gluconate utilization system Gnt-I transcriptional repressor 0.66 14
Acidovorax sp. GW101-3H11 0.74 Ac3H11_1945 Acyl-CoA hydrolase (EC 3.1.2.20) 0.76 Ac3H11_3230 Gluconate utilization system Gnt-I transcriptional repressor low > 79
Castellaniella sp019104865 MT123 0.53 ABCV34_RS09595 acyl-CoA thioesterase 0.56 ABCV34_RS12285 LacI family DNA-binding transcriptional regulator low > 48
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS03270 acyl-CoA hydrolase 0.44 BPHYT_RS00410 LacI family transcription regulator low > 109
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS19275 acyl-CoA hydrolase 0.41 HSERO_RS05460 LacI family transcription regulator low > 78
Enterobacter sp. TBS_079 0.43 MPMX20_02575 putative acyl-CoA thioester hydrolase 0.27 MPMX20_04319 HTH-type transcriptional regulator GntR low > 85
Pectobacterium carotovorum WPP14 0.43 HER17_RS10965 acyl-CoA thioester hydrolase YciA 0.29 HER17_RS01450 gluconate operon transcriptional repressor GntR low > 75
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_08560 acyl-CoA thioester hydrolase YciA 0.30 CSW01_01485 transcriptional regulator low > 62
Enterobacter asburiae PDN3 0.42 EX28DRAFT_0923 Acyl-CoA hydrolase 0.27 EX28DRAFT_4274 transcriptional regulator, LacI family low > 76
Dickeya dianthicola ME23 0.42 DZA65_RS10910 acyl-CoA thioester hydrolase YciA 0.29 DZA65_RS20970 gluconate operon transcriptional repressor GntR low > 75
Dickeya dadantii 3937 0.42 DDA3937_RS10430 acyl-CoA thioester hydrolase YciA 0.31 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Dickeya dianthicola 67-19 0.42 HGI48_RS10435 acyl-CoA thioester hydrolase YciA 0.30 HGI48_RS19900 gluconate operon transcriptional repressor GntR low > 71
Serratia liquefaciens MT49 0.42 IAI46_14085 acyl-CoA thioester hydrolase YciA 0.28 IAI46_23965 gluconate operon transcriptional repressor GntR low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF2735 Acyl-CoA thioesterase YciA, involved in membrane biogenesis 0.27 GFF570 Gluconate utilization system Gnt-I transcriptional repressor 0.53 46
Pantoea sp. MT58 0.41 IAI47_09135 acyl-CoA thioester hydrolase YciA 0.28 IAI47_01650 gluconate operon transcriptional repressor GntR low > 76
Escherichia coli BW25113 0.40 b1253 yciA predicted hydrolase (NCBI) 0.27 b3438 gntR DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli BL21 0.40 ECD_01227 acyl-CoA esterase 0.26 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor low > 60
Escherichia coli ECOR38 0.40 HEPCGN_25145 yciA acyl-CoA thioester hydrolase YciA 0.27 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR low > 85
Escherichia fergusonii Becca 0.40 EFB2_02672 putative acyl-CoA thioester hydrolase 0.27 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Escherichia coli ECOR27 0.40 NOLOHH_20370 yciA acyl-CoA thioester hydrolase YciA 0.26 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_02430 putative acyl-CoA thioester hydrolase 0.27 OHPLBJKB_00264 HTH-type transcriptional regulator GntR low > 73
Escherichia coli Nissle 1917 0.40 ECOLIN_RS07565 acyl-CoA thioester hydrolase YciA 0.27 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR low > 52
Escherichia coli ECRC62 0.40 BNILDI_18515 yciA acyl-CoA thioester hydrolase YciA 0.27 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC102 0.40 NIAGMN_27555 yciA acyl-CoA thioester hydrolase YciA 0.27 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC101 0.40 MCAODC_21580 yciA acyl-CoA thioester hydrolase YciA 0.27 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC101 0.40 OKFHMN_28680 yciA acyl-CoA thioester hydrolase YciA 0.27 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC99 0.40 KEDOAH_25675 yciA acyl-CoA thioester hydrolase YciA 0.27 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC98 0.40 JDDGAC_05895 yciA acyl-CoA thioester hydrolase YciA 0.27 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR — —
Rhizobium sp. OAE497 0.39 ABIE40_RS10785 acyl-CoA thioesterase 0.27 ABIE40_RS04445 LacI family DNA-binding transcriptional regulator low > 107
Sinorhizobium meliloti 1021 0.38 SMc04228 hypothetical protein 0.29 SM_b20667 LacI family transcriptional regulator low > 103
Pseudomonas putida KT2440 0.36 PP_5331 Long-chain acyl-CoA thioester hydrolase 0.51 PP_3415 Transcriptional regulator, LacI family low > 96
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_5043 Thioesterase superfamily 0.53 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_5043 Thioesterase superfamily 0.53 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas sp. RS175 0.36 PFR28_04491 putative acyl-CoA thioester hydrolase 0.55 PFR28_00593 HTH-type transcriptional regulator GntR 0.23 66
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_09915 long-chain acyl-CoA thioester hydrolase 0.54 AO353_03255 LacI family transcriptional regulator low > 101
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_751 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.55 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas simiae WCS417 0.35 PS417_28095 long-chain acyl-CoA thioester hydrolase 0.55 PS417_21990 LacI family transcriptional regulator — —
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS29780 acyl-CoA thioesterase 0.55 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS29780 acyl-CoA thioesterase 0.55 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_2032 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.55 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor — —
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_11055 long-chain acyl-CoA thioester hydrolase 0.55 AO356_05065 LacI family transcriptional regulator 0.26 62
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_4077 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.54 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor low > 103
Pseudomonas stutzeri RCH2 0.34 Psest_0218 Acyl-CoA hydrolase 0.55 Psest_2126 Transcriptional regulators low > 67

Not shown: 21 genomes with orthologs for GFF516 only; 4 genomes with orthologs for GFF5509 only