Conservation of cofitness between GFF1330 and GFF4789 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1330 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) 1.0 GFF4789 Lipoprotein NlpD 0.51 12
Escherichia coli ECRC101 0.91 MCAODC_10440 yqeF putative acetyl-CoA acetyltransferase 0.75 MCAODC_11015 nlpD murein hydrolase activator NlpD low > 87
Escherichia coli Nissle 1917 0.91 ECOLIN_RS15960 acetyl-CoA C-acetyltransferase 0.77 ECOLIN_RS15335 murein hydrolase activator NlpD low > 55
Klebsiella pneumoniae MKP103 0.87 KDGMDA_04020 acetyl-CoA C-acyltransferase 0.71 KDGMDA_03225 murein hydrolase activator NlpD low > 95
Enterobacter sp. TBS_079 0.87 MPMX20_03719 Acetyl-CoA acetyltransferase 0.75 MPMX20_03628 Murein hydrolase activator NlpD low > 85
Klebsiella michiganensis M5al 0.87 BWI76_RS23445 acetyl-CoA acetyltransferase 0.75 BWI76_RS22650 lipoprotein NlpD low > 92
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2923 acetyl-CoA acetyltransferases 0.80 EX28DRAFT_2838 Membrane proteins related to metalloendopeptidases low > 76
Pseudomonas sp. BP01 0.71 JOY50_RS15645 acetyl-CoA C-acetyltransferase 0.31 JOY50_RS23750 peptidoglycan DD-metalloendopeptidase family protein — —
Pseudomonas putida KT2440 0.70 PP_4636 acetyl-CoA acetyltransferase 0.30 PP_1622 metallopeptidase, M23B subfamily — —
Pseudomonas sp. S08-1 0.69 OH686_17215 Acetyl-CoA acetyltransferase 0.29 OH686_18180 Murein hydrolase activator NlpD low > 80
Pseudomonas sp. SVBP6 0.69 COO64_RS15130 acetyl-CoA C-acetyltransferase 0.29 COO64_RS19790 peptidoglycan DD-metalloendopeptidase family protein low > 93
Pseudomonas stutzeri RCH2 0.64 Psest_1076 acetyl-CoA acetyltransferases 0.25 Psest_2807 Membrane proteins related to metalloendopeptidases — —
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS01180 acetyl-CoA acetyltransferase 0.27 HSERO_RS14835 peptidase M23 low > 78
Acidovorax sp. GW101-3H11 0.57 Ac3H11_2303 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) 0.26 Ac3H11_1786 Lipoprotein NlpD — —
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_17645 acetyl-CoA C-acetyltransferase 0.37 CSW01_02830 murein hydrolase activator NlpD low > 62
Shewanella oneidensis MR-1 0.45 SO1677 atoB 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) (from data) 0.32 SO3433 nlpD lipoprotein NlpD (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.45 MIT1002_01671 Acetyl-CoA acetyltransferase 0.36 MIT1002_00626 Murein hydrolase activator NlpD precursor low > 70
Shewanella amazonensis SB2B 0.44 Sama_1375 Acetyl-CoA C-acetyltransferase (RefSeq) 0.31 Sama_1043 lipoprotein NlpD (RefSeq) low > 62
Shewanella sp. ANA-3 0.44 Shewana3_2771 acetyl-CoA acetyltransferases (RefSeq) 0.33 Shewana3_1123 peptidase M23B (RefSeq) low > 73
Shewanella loihica PV-4 0.44 Shew_1667 acetyl-CoA acetyltransferase (RefSeq) 0.33 Shew_1212 peptidase M23B (RefSeq) low > 60
Dechlorosoma suillum PS 0.41 Dsui_0976 acetyl-CoA acetyltransferase 0.28 Dsui_1970 metalloendopeptidase-like membrane protein low > 51
Acinetobacter radioresistens SK82 0.41 MPMX26_02383 Acetyl-CoA acetyltransferase 0.21 MPMX26_01055 Murein hydrolase activator NlpD low > 36
Serratia liquefaciens MT49 0.37 IAI46_16395 3-oxoadipyl-CoA thiolase 0.56 IAI46_03785 murein hydrolase activator NlpD low > 87
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS20570 acetyl-CoA C-acyltransferase 0.21 ABZR86_RS06580 peptidoglycan DD-metalloendopeptidase family protein low > 74
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_04025 paaJ acetyl-CoA C-acyltransferase 0.21 OKGIIK_08100 Peptidase M23 low > 53
Rhodanobacter denitrificans MT42 0.36 LRK55_RS04245 3-oxoadipyl-CoA thiolase 0.21 LRK55_RS16390 peptidoglycan DD-metalloendopeptidase family protein — —
Rhodanobacter sp000427505 FW510-R12 0.36 LRK53_RS13375 acetyl-CoA C-acyltransferase 0.22 LRK53_RS12255 peptidoglycan DD-metalloendopeptidase family protein — —
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS15265 acetyl-CoA C-acyltransferase 0.21 LRK54_RS16665 peptidoglycan DD-metalloendopeptidase family protein 0.79 43

Not shown: 73 genomes with orthologs for GFF1330 only; 7 genomes with orthologs for GFF4789 only