Conservation of cofitness between GFF4054 and GFF4285 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4054 ClpB protein 1.0 GFF4285 Protein YaiI 0.60 3
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS04580 ATPase 0.58 BPHYT_RS28065 hypothetical protein low > 109
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS34560 type VI secretion system ATPase TssH 0.57 QEN71_RS38155 YaiI/YqxD family protein low > 153
Erwinia tracheiphila SCR3 0.54 LU632_RS00685 tssH type VI secretion system ATPase TssH 0.77 LU632_RS18985 YaiI/YqxD family protein low > 74
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS29660 type VI secretion system ATPase TssH 0.35 PFLU_RS29120 YaiI/YqxD family protein low > 109
Pseudomonas fluorescens SBW25 0.51 PFLU_RS29660 type VI secretion system ATPase TssH 0.35 PFLU_RS29120 YaiI/YqxD family protein low > 109
Pseudomonas simiae WCS417 0.51 PS417_27980 ATPase AAA 0.36 PS417_27460 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_09620 ClpV1 family T6SS ATPase 0.36 AO353_08910 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_4327 ClpB protein 0.37 Pf6N2E2_4448 probable P23 protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_12245 ClpV1 family T6SS ATPase 0.36 AO356_12870 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.51 Pf1N1B4_2056 ClpB protein 0.36 Pf1N1B4_2203 probable P23 protein low > 87
Enterobacter sp. TBS_079 0.50 MPMX20_02660 Protein ClpV1 0.84 MPMX20_00977 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.50 EX28DRAFT_0807 type VI secretion ATPase, ClpV1 family 0.84 EX28DRAFT_2584 Uncharacterized protein conserved in bacteria — —
Pantoea sp. MT58 0.49 IAI47_11580 type VI secretion system ATPase TssH 0.79 IAI47_14940 YaiI/YqxD family protein low > 76
Paraburkholderia graminis OAS925 0.48 ABIE53_003933 type VI secretion system protein VasG 0.57 ABIE53_001465 uncharacterized protein YaiI (UPF0178 family) low > 113
Acinetobacter radioresistens SK82 0.43 MPMX26_00960 Protein ClpV1 0.52 MPMX26_02216 hypothetical protein low > 36
Pseudomonas putida KT2440 0.41 PP_3095 Protein ClpV1 0.36 PP_5221 conserved protein of unknown function, UPF0178 family low > 96
Rahnella sp. WP5 0.40 EX31_RS01880 type VI secretion system ATPase TssH 0.75 EX31_RS20265 YaiI/YqxD family protein low > 89
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS03730 ATPase 0.59 HSERO_RS02105 hypothetical protein low > 78
Ralstonia solanacearum PSI07 0.39 RPSI07_RS02950 type VI secretion system ATPase TssH 0.54 RPSI07_RS06560 YaiI/YqxD family protein low > 81
Escherichia fergusonii Becca 0.37 EFB2_01093 Protein ClpV1 0.74 EFB2_03669 hypothetical protein low > 86
Escherichia coli Nissle 1917 0.37 ECOLIN_RS15725 type VI secretion system ATPase TssH 0.91 ECOLIN_RS02350 YaiI/YqxD family protein low > 52
Marinobacter adhaerens HP15 0.37 HP15_3467 type VI secretion ATPase, ClpV1 family 0.54 HP15_841 YaiI/YqxD-like protein low > 73
Agrobacterium fabrum C58 0.36 Atu4344 ATP-dependent Clp protease, ATP-binding subunit 0.28 Atu1478 hypothetical protein low > 89
Dickeya dadantii 3937 0.35 DDA3937_RS07060 type VI secretion system ATPase TssH 0.73 DDA3937_RS04360 YaiI/YqxD family protein low > 74
Serratia liquefaciens MT49 0.35 IAI46_05600 type VI secretion system ATPase TssH 0.79 IAI46_18550 YaiI/YqxD family protein low > 86
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_14595 type VI secretion system ATPase TssH 0.59 CSW01_04525 DUF188 domain-containing protein low > 62
Pseudomonas stutzeri RCH2 0.35 Psest_0125 type VI secretion ATPase, ClpV1 family 0.37 Psest_3736 Uncharacterized protein conserved in bacteria low > 67
Dickeya dianthicola 67-19 0.35 HGI48_RS07990 type VI secretion system ATPase TssH 0.72 HGI48_RS04350 YaiI/YqxD family protein low > 71
Pseudomonas sp. S08-1 0.34 OH686_12815 type VI secretion ATPase, ClpV1 family 0.34 OH686_13970 Protein YaiI low > 80
Dickeya dianthicola ME23 0.34 DZA65_RS08585 type VI secretion system ATPase TssH 0.72 DZA65_RS04270 YaiI/YqxD family protein low > 75
Azospirillum brasilense Sp245 0.34 AZOBR_RS21220 ATPase 0.30 AZOBR_RS09510 hypothetical protein — —
Pectobacterium carotovorum WPP14 0.34 HER17_RS04885 type VI secretion system ATPase TssH 0.78 HER17_RS17270 YaiI/YqxD family protein low > 75
Azospirillum sp. SherDot2 0.34 MPMX19_03417 Protein ClpV1 0.29 MPMX19_00625 hypothetical protein low > 112
Escherichia coli ECOR27 0.33 NOLOHH_02260 tssH type VI secretion system ATPase TssH 0.91 NOLOHH_01530 yaiI YaiI/YqxD family protein low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_03436 Protein ClpV1 0.91 OHPLBJKB_03287 hypothetical protein low > 73
Escherichia coli ECRC101 0.32 MCAODC_00420 tssH type VI secretion system ATPase TssH 0.91 MCAODC_27830 yaiI YaiI/YqxD family protein — —
Escherichia coli ECRC102 0.32 NIAGMN_07750 tssH type VI secretion system ATPase TssH 0.91 NIAGMN_06660 yaiI YaiI/YqxD family protein — —
Escherichia coli ECRC99 0.32 KEDOAH_18250 tssH type VI secretion system ATPase TssH 0.91 KEDOAH_19360 yaiI YaiI/YqxD family protein — —
Escherichia coli ECRC101 0.32 OKFHMN_09900 tssH type VI secretion system ATPase TssH 0.91 OKFHMN_08605 yaiI YaiI/YqxD family protein — —
Escherichia coli ECRC98 0.32 JDDGAC_13500 tssH type VI secretion system ATPase TssH 0.91 JDDGAC_12260 yaiI YaiI/YqxD family protein — —

Not shown: 11 genomes with orthologs for GFF4054 only; 29 genomes with orthologs for GFF4285 only