Conservation of cofitness between GFF1806 and GFF4006 in Hydrogenophaga sp. GW460-11-11-14-LB1

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 1.0 GFF4006 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) 0.71 20
Variovorax sp. OAS795 0.70 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.78 ABID97_RS17310 PLP-dependent aminotransferase family protein low > 91
Variovorax sp. SCN45 0.69 GFF3627 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.79 GFF417 Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) 0.52 110
Acidovorax sp. GW101-3H11 0.67 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.84 Ac3H11_1015 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) (from data) — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS02415 cytochrome C550 0.41 BPHYT_RS32640 2-aminoadipate aminotransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.42 H281DRAFT_01831 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain low > 103
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.39 QEN71_RS40175 PLP-dependent aminotransferase family protein low > 153
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS01680 cytochrome C550 0.36 RR42_RS02910 2-aminoadipate aminotransferase low > 128
Ralstonia solanacearum PSI07 0.42 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.57 RPSI07_RS23025 PLP-dependent aminotransferase family protein low > 81
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.58 ABZR87_RS05985 PLP-dependent aminotransferase family protein low > 80
Ralstonia solanacearum GMI1000 0.41 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.53 RS_RS01125 PLP-dependent aminotransferase family protein low > 80
Ralstonia solanacearum UW163 0.40 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.57 UW163_RS03255 PLP-dependent aminotransferase family protein — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.57 RALBFv3_RS10325 PLP-dependent aminotransferase family protein low > 76
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.25 AO356_19495 GntR family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.25 Pf6N2E2_5813 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) low > 103
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.26 Pf1N1B4_3771 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.26 AO353_02295 GntR family transcriptional regulator low > 101
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.26 Psyr_1841 Aminotransferase, class I and II low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.26 Psyr_1841 Aminotransferase, class I and II low > 86
Pseudomonas sp. RS175 0.37 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.25 PFR28_03135 2-aminoadipate transaminase low > 88
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.27 PFLU_RS21355 PLP-dependent aminotransferase family protein low > 109
Pseudomonas fluorescens SBW25 0.37 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.27 PFLU_RS21355 PLP-dependent aminotransferase family protein low > 109
Pseudomonas simiae WCS417 0.37 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.28 PS417_19385 GntR family transcriptional regulator low > 88
Pseudomonas sp. S08-1 0.36 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.28 OH686_00615 Aspartate aminotransferase (AspB-4) low > 80
Pectobacterium carotovorum WPP14 0.34 HER17_RS12545 serine hydrolase 0.40 HER17_RS00520 PLP-dependent aminotransferase family protein low > 75
Dickeya dianthicola ME23 0.34 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase 0.40 DZA65_RS21720 PLP-dependent aminotransferase family protein low > 75
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.38 EX28DRAFT_2740 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs low > 76
Dickeya dianthicola 67-19 0.34 HGI48_RS09435 serine hydrolase 0.39 HGI48_RS20705 PLP-dependent aminotransferase family protein low > 71
Enterobacter sp. TBS_079 0.33 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.38 MPMX20_03530 2-aminoadipate transaminase low > 85
Dickeya dadantii 3937 0.33 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA 0.40 DDA3937_RS00685 PLP-dependent aminotransferase family protein low > 74
Rahnella sp. WP5 0.33 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.42 EX31_RS14780 PLP-dependent aminotransferase family protein low > 89
Klebsiella michiganensis M5al 0.33 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase 0.36 BWI76_RS24235 Branched-chain-amino-acid transaminase (EC 2.6.1.42) (from data) low > 92
Serratia liquefaciens MT49 0.32 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.38 IAI46_00985 PLP-dependent aminotransferase family protein low > 86

Not shown: 49 genomes with orthologs for GFF1806 only; 3 genomes with orthologs for GFF4006 only