Conservation of cofitness between PS417_27750 and PS417_20155 in Pseudomonas simiae WCS417

26 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27750 transcriptional regulator 1.0 PS417_20155 23S rRNA methyltransferase 0.20 17
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS29425 cupin domain-containing protein 0.94 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas fluorescens SBW25 0.99 PFLU_RS29425 cupin domain-containing protein 0.94 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_2130 FIG00953403: hypothetical protein 0.87 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas sp. RS175 0.89 PFR28_04408 hypothetical protein 0.84 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 88
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4382 FIG00953403: hypothetical protein 0.85 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 103
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_803 FIG00953403: hypothetical protein 0.84 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_09200 transcriptional regulator 0.82 AO353_02715 23S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_12575 transcriptional regulator 0.84 AO356_19055 23S rRNA methyltransferase low > 104
Pseudomonas putida KT2440 0.85 PP_5279 conserved protein of unknown function 0.69 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 96
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_0226 Protein of unknown function DUF861 0.76 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_0226 Protein of unknown function DUF861 0.76 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas sp. S08-1 0.81 OH686_13640 Predicted enzyme of the cupin superfamily 0.73 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA low > 80
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS32850 transcriptional regulator 0.32 BPHYT_RS09125 23S rRNA methyltransferase low > 109
Shewanella sp. ANA-3 0.62 Shewana3_3108 protein of unknown function DUF861, cupin_3 (RefSeq) 0.35 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.62 Shew_0964 protein of unknown function DUF861, cupin_3 (RefSeq) 0.37 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.33 6
Shewanella amazonensis SB2B 0.61 Sama_2651 hypothetical protein (RefSeq) 0.36 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.60 SO3501 conserved hypothetical protein (NCBI ptt file) 0.36 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) low > 76
Azospirillum sp. SherDot2 0.40 MPMX19_00430 hypothetical protein 0.15 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 112
Azospirillum brasilense Sp245 0.39 AZOBR_RS00120 cupin 0.14 AZOBR_RS01195 RNA methyltransferase low > 97
Agrobacterium fabrum C58 0.37 Atu1253 hypothetical protein 0.16 Atu0735 RNA methyltransferase low > 89
Rhizobium sp. OAE497 0.36 ABIE40_RS07040 cupin domain-containing protein 0.16 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase low > 107
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS15290 cupin 0.30 RR42_RS13170 23S rRNA methyltransferase low > 128
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS11025 cupin 0.29 HSERO_RS14825 23S rRNA methyltransferase low > 78
Dinoroseobacter shibae DFL-12 0.32 Dshi_1826 protein of unknown function DUF861 cupin_3 (RefSeq) 0.13 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) low > 64
Dechlorosoma suillum PS 0.27 Dsui_0795 putative enzyme of the cupin superfamily 0.32 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA low > 51
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS23585 cupin domain-containing protein 0.32 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —

Not shown: 0 genomes with orthologs for PS417_27750 only; 72 genomes with orthologs for PS417_20155 only