Conservation of cofitness between PS417_24085 and PS417_15740 in Pseudomonas simiae WCS417

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_24085 protein RnfH 1.0 PS417_15740 hypothetical protein 0.21 7
Pseudomonas fluorescens SBW25 0.76 PFLU_RS25925 RnfH family protein 0.38 PFLU_RS11480 response regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS25925 RnfH family protein 0.38 PFLU_RS11480 response regulator low > 109
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_1181 UPF0125 protein yfjF 0.83 Pf1N1B4_5741 Nitrate/nitrite response regulator protein — —
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_05675 protein RnfH 0.84 AO353_22075 hypothetical protein low > 101
Pseudomonas stutzeri RCH2 0.59 Psest_0959 Uncharacterized protein conserved in bacteria 0.48 Psest_3491 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain — —
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_07525 protein RnfH 0.85 AO356_25185 hypothetical protein — —
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_04385 RnfH family protein 0.36 CSW01_17560 DNA-binding response regulator — —
Dickeya dianthicola ME23 0.41 DZA65_RS04225 RnfH family protein 0.43 DZA65_RS12490 two-component system response regulator NarL low > 75
Rahnella sp. WP5 0.40 EX31_RS21750 RnfH family protein 0.40 EX31_RS06550 two-component system response regulator NarL low > 89
Dickeya dadantii 3937 0.40 DDA3937_RS04315 RnfH family protein 0.43 DDA3937_RS11950 two-component system response regulator NarL low > 74
Enterobacter asburiae PDN3 0.40 EX28DRAFT_2721 Uncharacterized protein conserved in bacteria 0.40 EX28DRAFT_0848 two component transcriptional regulator, LuxR family low > 76
Enterobacter sp. TBS_079 0.40 MPMX20_03488 Persistence and stress-resistance antitoxin PasI 0.40 MPMX20_02618 Nitrate/nitrite response regulator protein NarL low > 85
Dickeya dianthicola 67-19 0.40 HGI48_RS04310 RnfH family protein 0.43 HGI48_RS12040 two-component system response regulator NarL — —
Pantoea sp. MT58 0.39 IAI47_04800 RnfH family protein 0.46 IAI47_04245 two-component system response regulator NarL low > 76
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS05690 RnfH family protein 0.36 ABZR86_RS21335 response regulator transcription factor 0.35 36
Paraburkholderia graminis OAS925 0.38 ABIE53_002480 putative ubiquitin-RnfH superfamily antitoxin RatB of RatAB toxin-antitoxin module 0.29 ABIE53_005345 two-component system nitrate/nitrite response regulator NarL — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF4160 UPF0125 protein yfjF 0.41 GFF2765 Nitrate/nitrite response regulator protein low > 78
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS11010 RnfH 0.35 HSERO_RS18195 XRE family transcriptional regulator low > 78
Escherichia coli ECOR27 0.37 NOLOHH_12805 rnfH RnfH family protein 0.40 NOLOHH_20535 narX nitrate/nitrite two-component system sensor histidine kinase NarX — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01089 hypothetical protein 0.40 OHPLBJKB_02463 Nitrate/nitrite response regulator protein NarL low > 73
Escherichia coli ECRC98 0.37 JDDGAC_24800 rnfH RnfH family protein 0.40 JDDGAC_06055 narX nitrate/nitrite two-component system sensor histidine kinase NarX — —
Escherichia coli ECRC62 0.37 BNILDI_11610 rnfH RnfH family protein 0.40 BNILDI_18685 narX nitrate/nitrite two-component system sensor histidine kinase NarX — —
Escherichia coli ECRC101 0.37 MCAODC_11660 rnfH RnfH family protein 0.40 MCAODC_21740 narX nitrate/nitrite two-component system sensor histidine kinase NarX — —
Escherichia coli ECRC102 0.37 NIAGMN_18905 rnfH RnfH family protein 0.40 NIAGMN_27715 narX nitrate/nitrite two-component system sensor histidine kinase NarX — —
Escherichia coli ECRC101 0.37 OKFHMN_21135 rnfH RnfH family protein 0.40 OKFHMN_28520 narX nitrate/nitrite two-component system sensor histidine kinase NarX — —
Escherichia coli ECRC99 0.37 KEDOAH_07085 rnfH RnfH family protein 0.40 KEDOAH_25515 narX nitrate/nitrite two-component system sensor histidine kinase NarX — —
Escherichia coli BW25113 0.37 b2618 b2618 orf, hypothetical protein (VIMSS) 0.40 b1221 narL DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI) low > 76
Escherichia coli BL21 0.37 ECD_02506 UPF0125 family protein 0.40 ECD_01199 response regulator in two-component regulatory system with NarX — —
Escherichia fergusonii Becca 0.37 EFB2_01275 Persistence and stress-resistance antitoxin PasI 0.40 EFB2_02705 Nitrate/nitrite response regulator protein NarL low > 86
Escherichia coli Nissle 1917 0.37 ECOLIN_RS14785 RnfH family protein 0.40 ECOLIN_RS07375 two-component system response regulator NarL low > 52
Escherichia coli ECOR38 0.37 HEPCGN_20255 rnfH RnfH family protein 0.40 HEPCGN_24980 narX nitrate/nitrite two-component system sensor histidine kinase NarX low > 85
Pectobacterium carotovorum WPP14 0.37 HER17_RS17430 RnfH family protein 0.40 HER17_RS09760 two-component system response regulator NarL low > 75
Serratia liquefaciens MT49 0.36 IAI46_19645 RnfH family protein 0.45 IAI46_15610 two-component system response regulator NarL low > 86
Klebsiella michiganensis M5al 0.36 BWI76_RS21570 RnfH family protein 0.41 BWI76_RS17350 DNA-binding response regulator low > 92
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_07365 RnfH family protein 0.36 OKGIIK_03330 citB DNA-binding response regulator low > 52
Rhodanobacter denitrificans MT42 0.31 LRK55_RS17790 RnfH family protein 0.36 LRK55_RS14195 response regulator transcription factor — —
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS17935 RnfH family protein 0.36 LRK54_RS14480 response regulator transcription factor low > 59

Not shown: 10 genomes with orthologs for PS417_24085 only; 25 genomes with orthologs for PS417_15740 only