Conservation of cofitness between GFF3779 and GFF3040 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF3779 Colicin I receptor precursor 1.0 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.42 18
Escherichia coli ECOR27 0.91 NOLOHH_15080 cirA catecholate siderophore receptor CirA 0.98 NOLOHH_11175 speA biosynthetic arginine decarboxylase low > 75
Escherichia coli ECRC62 0.91 BNILDI_14000 cirA catecholate siderophore receptor CirA 0.98 BNILDI_09755 speA biosynthetic arginine decarboxylase low > 75
Escherichia coli BW25113 0.91 b2155 cirA ferric iron-catecholate outer membrane transporter (NCBI) 0.98 b2938 speA arginine decarboxylase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.91 OHPLBJKB_01556 Colicin I receptor 0.98 OHPLBJKB_00778 Biosynthetic arginine decarboxylase low > 73
Escherichia coli BL21 0.90 ECD_02084 colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter 0.98 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding low > 61
Escherichia coli Nissle 1917 0.90 ECOLIN_RS12615 catecholate siderophore receptor CirA 0.98 ECOLIN_RS16350 biosynthetic arginine decarboxylase — —
Escherichia fergusonii Becca 0.90 EFB2_01701 Colicin I receptor 0.98 EFB2_00962 Biosynthetic arginine decarboxylase low > 86
Escherichia coli ECRC101 0.90 MCAODC_14555 cirA catecholate siderophore receptor CirA 0.98 MCAODC_09825 speA biosynthetic arginine decarboxylase low > 87
Escherichia coli ECRC102 0.90 NIAGMN_21270 cirA catecholate siderophore receptor CirA 0.98 NIAGMN_17070 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC98 0.90 JDDGAC_27465 cirA catecholate siderophore receptor CirA 0.98 JDDGAC_22935 speA biosynthetic arginine decarboxylase low > 86
Escherichia coli ECRC99 0.90 KEDOAH_04680 cirA catecholate siderophore receptor CirA 0.98 KEDOAH_08835 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC100 0.90 OKFHMN_23505 cirA catecholate siderophore receptor CirA 0.98 OKFHMN_19305 speA biosynthetic arginine decarboxylase low > 80
Enterobacter asburiae PDN3 0.82 EX28DRAFT_0401 Outer membrane receptor for ferrienterochelin and colicins 0.96 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) low > 76
Klebsiella michiganensis M5al 0.81 BWI76_RS19680 catecholate siderophore receptor CirA 0.96 BWI76_RS24030 arginine decarboxylase low > 92
Pantoea sp. MT58 0.68 IAI47_04670 catecholate siderophore receptor CirA 0.88 IAI47_03660 biosynthetic arginine decarboxylase low > 76
Erwinia tracheiphila SCR3 0.64 LU632_RS00250 cirA catecholate siderophore receptor CirA 0.90 LU632_RS05510 speA biosynthetic arginine decarboxylase low > 74
Shewanella sp. ANA-3 0.29 Shewana3_3929 enterobactin receptor protein (RefSeq) 0.56 Shewana3_1624 arginine decarboxylase (RefSeq) low > 73
Serratia liquefaciens MT49 0.28 IAI46_17185 ligand-gated channel protein 0.89 IAI46_21140 biosynthetic arginine decarboxylase low > 86
Shewanella oneidensis MR-1 0.28 SO_4523 irgA enterobactin receptor protein (RefSeq) 0.56 SO1870 speA biosynthetic arginine decarboxylase (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_02525 iron-regulated outer membrane virulence protein 0.54 CSW01_18235 arginine decarboxylase low > 62
Pseudomonas stutzeri RCH2 0.26 Psest_3341 Outer membrane receptor for ferrienterochelin and colicins 0.41 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 67
Enterobacter sp. TBS_079 0.25 MPMX20_03126 Colicin I receptor 0.96 MPMX20_03799 Biosynthetic arginine decarboxylase low > 85
Pectobacterium carotovorum WPP14 0.25 HER17_RS19030 TonB-dependent receptor 0.88 HER17_RS02665 biosynthetic arginine decarboxylase low > 75
Pseudomonas fluorescens FW300-N2E2 0.25 Pf6N2E2_872 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins 0.41 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 103
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_27385 ligand-gated channel protein 0.41 AO356_08155 arginine decarboxylase low > 104
Pseudomonas fluorescens SBW25 0.24 PFLU_RS17765 TonB-dependent receptor 0.41 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS17765 TonB-dependent receptor 0.41 PFLU_RS03080 arginine decarboxylase low > 109
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_05420 TonB-dependent receptor 0.43 OKGIIK_15625 speA biosynthetic arginine decarboxylase — —
Alteromonas macleodii MIT1002 0.19 MIT1002_00918 Colicin I receptor precursor 0.34 MIT1002_03905 Biosynthetic arginine decarboxylase low > 70
Marinobacter adhaerens HP15 0.12 HP15_3002 TonB-dependent receptor 0.53 HP15_272 biosynthetic arginine decarboxylase low > 73
Bacteroides thetaiotaomicron VPI-5482 0.12 BT0496 TonB-dependent receptor (NCBI ptt file) 0.42 BT3394 putative arginine decarboxylase (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.12 HMPREF1058_RS01420 TonB-dependent receptor 0.40 HMPREF1058_RS12110 biosynthetic arginine decarboxylase low > 67
Phocaeicola dorei CL03T12C01 0.11 ABI39_RS15635 TonB-dependent receptor 0.40 ABI39_RS04690 biosynthetic arginine decarboxylase low > 72
Bacteroides ovatus ATCC 8483 0.11 BACOVA_03823 TonB-dependent receptor 0.41 BACOVA_01911 arginine 2-monooxygenase low > 94
Xanthomonas campestris pv. campestris strain 8004 0.11 Xcc-8004.4297.1 Outer membrane hemin receptor 0.45 Xcc-8004.4909.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) — —
Pseudomonas fluorescens GW456-L13 0.08 PfGW456L13_1884 TonB-dependent hemin , ferrichrome receptor 0.41 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 87
Pseudomonas fluorescens FW300-N1B4 0.08 Pf1N1B4_607 TonB-dependent hemin , ferrichrome receptor 0.41 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 87

Not shown: 10 genomes with orthologs for GFF3779 only; 24 genomes with orthologs for GFF3040 only