Conservation of cofitness between GFF3403 and GFF2907 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF3403 NAD-dependent protein deacetylase of SIR2 family 1.0 GFF2907 HTH-type transcriptional regulator hdfR 0.52 11
Escherichia coli Nissle 1917 0.89 ECOLIN_RS06455 Sir2 family NAD+-dependent deacetylase 0.87 ECOLIN_RS21630 HTH-type transcriptional regulator HdfR — —
Escherichia fergusonii Becca 0.89 EFB2_02855 NAD-dependent protein deacylase 0.87 EFB2_04871 HTH-type transcriptional regulator HdfR low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.89 OHPLBJKB_02546 NAD-dependent protein deacylase 0.88 OHPLBJKB_04288 HTH-type transcriptional regulator HdfR low > 73
Escherichia coli BL21 0.89 ECD_01118 deacetylase of acs and cheY, chemotaxis regulator 0.88 ECD_03642 flhDC operon transcriptional repressor low > 61
Escherichia coli ECOR27 0.89 NOLOHH_20965 cobB NAD-dependent protein deacylase 0.88 NOLOHH_06810 hdfR HTH-type transcriptional regulator HdfR low > 75
Escherichia coli ECRC98 0.89 JDDGAC_07100 cobB NAD-dependent protein deacylase 0.88 JDDGAC_18295 hdfR HTH-type transcriptional regulator HdfR low > 86
Escherichia coli ECOR38 0.89 HEPCGN_24045 cobB NAD-dependent protein deacylase 0.88 HEPCGN_13385 hdfR HTH-type transcriptional regulator HdfR low > 87
Escherichia coli ECRC102 0.89 NIAGMN_24390 cobB NAD-dependent protein deacylase 0.88 NIAGMN_12430 hdfR HTH-type transcriptional regulator HdfR — —
Escherichia coli ECRC62 0.89 BNILDI_19130 cobB NAD-dependent protein deacylase 0.88 BNILDI_04715 hdfR HTH-type transcriptional regulator HdfR low > 75
Escherichia coli ECRC101 0.89 MCAODC_22800 cobB NAD-dependent protein deacylase 0.88 MCAODC_05180 hdfR HTH-type transcriptional regulator HdfR low > 87
Escherichia coli ECRC100 0.89 OKFHMN_03440 cobB NAD-dependent protein deacylase 0.88 OKFHMN_14675 hdfR HTH-type transcriptional regulator HdfR low > 80
Escherichia coli ECRC99 0.89 KEDOAH_24315 cobB NAD-dependent protein deacylase 0.88 KEDOAH_13475 hdfR HTH-type transcriptional regulator HdfR — —
Enterobacter asburiae PDN3 0.85 EX28DRAFT_1810 NAD-dependent protein deacetylases, SIR2 family 0.82 EX28DRAFT_4436 Transcriptional regulator low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_01801 NAD-dependent protein deacylase 0.82 MPMX20_04505 HTH-type transcriptional regulator HdfR low > 85
Escherichia coli BW25113 0.81 b1120 cobB deacetylase of acs and cheY, regulates chemotaxis (NCBI) 0.88 b4480 hdfR transcriptional regulator HdfR (NCBI) low > 76
Klebsiella michiganensis M5al 0.78 BWI76_RS11230 NAD-dependent deacylase 0.82 BWI76_RS00940 transcriptional regulator HdfR low > 92
Pantoea sp. MT58 0.75 IAI47_11950 NAD-dependent protein deacylase 0.63 IAI47_01000 HTH-type transcriptional regulator HdfR low > 76
Pectobacterium carotovorum WPP14 0.74 HER17_RS08800 NAD-dependent protein deacylase 0.62 HER17_RS01040 HTH-type transcriptional regulator HdfR low > 75
Rahnella sp. WP5 0.73 EX31_RS24540 NAD-dependent protein deacylase 0.59 EX31_RS14970 HTH-type transcriptional regulator HdfR low > 89
Serratia liquefaciens MT49 0.73 IAI46_10355 NAD-dependent protein deacylase 0.62 IAI46_24385 HTH-type transcriptional regulator HdfR low > 86
Dickeya dianthicola ME23 0.72 DZA65_RS13510 NAD-dependent protein deacylase 0.61 DZA65_RS21375 HTH-type transcriptional regulator HdfR low > 75
Erwinia tracheiphila SCR3 0.71 LU632_RS14640 cobB NAD-dependent protein deacylase 0.62 LU632_RS24450 hdfR HTH-type transcriptional regulator HdfR low > 74
Dickeya dianthicola 67-19 0.71 HGI48_RS13045 NAD-dependent protein deacylase 0.61 HGI48_RS20335 HTH-type transcriptional regulator HdfR low > 71
Dickeya dadantii 3937 0.70 DDA3937_RS12975 NAD-dependent protein deacylase 0.61 DDA3937_RS20190 HTH-type transcriptional regulator HdfR low > 74
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_07575 NAD-dependent protein deacylase 0.28 CSW01_19195 LysR family transcriptional regulator low > 62
Alteromonas macleodii MIT1002 0.53 MIT1002_02145 NAD-dependent protein deacylase 0.20 MIT1002_02368 HTH-type transcriptional activator AllS low > 70
Shewanella loihica PV-4 0.49 Shew_1662 NAD-dependent deacetylase (RefSeq) 0.25 Shew_2897 LysR family transcriptional regulator (RefSeq) low > 60
Shewanella sp. ANA-3 0.48 Shewana3_1717 NAD-dependent deacetylase (RefSeq) 0.32 Shewana3_2403 LysR family transcriptional regulator (RefSeq) — —
Shewanella oneidensis MR-1 0.48 SO1938 cobB cobB protein (NCBI ptt file) 0.32 SO2202 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Azospirillum sp. SherDot2 0.47 MPMX19_02648 NAD-dependent protein deacylase 0.17 MPMX19_03737 HTH-type transcriptional regulator HdfR low > 112
Shewanella amazonensis SB2B 0.47 Sama_1435 NAD-dependent deacetylase (RefSeq) 0.31 Sama_1997 LysR family transcriptional regulator (RefSeq) low > 62
Magnetospirillum magneticum AMB-1 0.45 AMB_RS04415 NAD-dependent protein deacylase 0.19 AMB_RS21960 LysR family transcriptional regulator low > 64
Dinoroseobacter shibae DFL-12 0.36 Dshi_2612 Silent information regulator protein Sir2 (RefSeq) 0.19 Dshi_2990 transcriptional regulator, LysR family (RefSeq) low > 64
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_23430 NAD-dependent deacetylase 0.17 AO356_00585 LysR family transcriptional regulator low > 104
Pseudomonas stutzeri RCH2 0.25 Psest_2405 NAD-dependent protein deacetylases, SIR2 family 0.19 Psest_0802 Transcriptional regulator low > 67
Pseudomonas putida KT2440 0.25 PP_5402 deacetylase of acetyl-CoA synthetase, NAD-dependent 0.15 PP_2350 LysR family transcriptional regulator low > 96
Pseudomonas fluorescens FW300-N2E2 0.14 Pf6N2E2_2109 NAD-dependent protein deacetylase of SIR2 family 0.17 Pf6N2E2_2079 HTH-type transcriptional regulator hdfR low > 103
Pseudomonas fluorescens SBW25-INTG 0.13 PFLU_RS10600 NAD-dependent protein deacetylase 0.18 PFLU_RS19485 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.13 PFLU_RS10600 NAD-dependent protein deacetylase 0.18 PFLU_RS19485 LysR family transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.13 PS417_10540 NAD-dependent deacetylase 0.18 PS417_17700 LysR family transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N2E3 0.13 AO353_26795 NAD-dependent deacetylase 0.17 AO353_22745 LysR family transcriptional regulator low > 101

Not shown: 25 genomes with orthologs for GFF3403 only; 4 genomes with orthologs for GFF2907 only