Conservation of cofitness between PS417_23045 and PS417_12240 in Pseudomonas simiae WCS417

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_23045 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) 1.0 PS417_12240 lysine decarboxylase 0.15 19
Pseudomonas fluorescens SBW25 0.96 PFLU_RS24710 alpha,alpha-phosphotrehalase 0.99 PFLU_RS12930 lysine decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS24710 alpha,alpha-phosphotrehalase 0.99 PFLU_RS12930 lysine decarboxylase low > 109
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_15985 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) 0.93 AO353_23560 lysine decarboxylase low > 101
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_835 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) 0.91 Pf1N1B4_4600 Lysine decarboxylase, inducible (EC 4.1.1.18) low > 87
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_04665 alpha,alpha-phosphotrehalase 0.37 CSW01_01445 lysine decarboxylase — —
Serratia liquefaciens MT49 0.55 IAI46_02150 alpha,alpha-phosphotrehalase 0.36 IAI46_20175 lysine decarboxylase LdcC — —
Enterobacter asburiae PDN3 0.55 EX28DRAFT_3438 alpha,alpha-phosphotrehalase 0.36 EX28DRAFT_3774 Arginine/lysine/ornithine decarboxylases low > 76
Pectobacterium carotovorum WPP14 0.55 HER17_RS07195 alpha,alpha-phosphotrehalase 0.23 HER17_RS16680 ornithine decarboxylase low > 75
Rahnella sp. WP5 0.54 EX31_RS08390 alpha,alpha-phosphotrehalase 0.36 EX31_RS12950 lysine decarboxylase LdcC low > 89
Escherichia coli ECOR38 0.54 HEPCGN_10095 treC alpha,alpha-phosphotrehalase 0.38 HEPCGN_11185 adiA arginine decarboxylase low > 85
Enterobacter sp. TBS_079 0.54 MPMX20_00537 Trehalose-6-phosphate hydrolase 0.36 MPMX20_00870 Constitutive lysine decarboxylase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF921 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) 0.38 GFF1473 Arginine decarboxylase, catabolic (EC 4.1.1.19) low > 78
Escherichia fergusonii Becca 0.54 EFB2_04294 Trehalose-6-phosphate hydrolase 0.38 EFB2_04465 Biodegradative arginine decarboxylase low > 86
Escherichia coli ECRC62 0.54 BNILDI_07345 treC alpha,alpha-phosphotrehalase 0.38 BNILDI_06675 adiA arginine decarboxylase — —
Escherichia coli BL21 0.54 ECD_04107 trehalose-6-P hydrolase 0.38 ECD_03988 arginine decarboxylase low > 60
Escherichia coli BW25113 0.54 b4239 treC trehalose-6-P hydrolase (NCBI) 0.38 b4117 adiA biodegradative arginine decarboxylase (RefSeq) low > 76
Escherichia coli Nissle 1917 0.54 ECOLIN_RS24595 alpha,alpha-phosphotrehalase 0.38 ECOLIN_RS23825 arginine decarboxylase low > 52
Escherichia coli ECOR27 0.53 NOLOHH_04165 treC alpha,alpha-phosphotrehalase 0.38 NOLOHH_04815 adiA arginine decarboxylase — —
Escherichia coli ECRC101 0.53 MCAODC_02405 treC alpha,alpha-phosphotrehalase 0.38 MCAODC_03060 adiA arginine decarboxylase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_03796 Trehalose-6-phosphate hydrolase 0.38 OHPLBJKB_03927 Biodegradative arginine decarboxylase low > 73
Escherichia coli ECRC101 0.53 OKFHMN_11900 treC alpha,alpha-phosphotrehalase 0.38 OKFHMN_12550 adiA arginine decarboxylase — —
Escherichia coli ECRC99 0.53 KEDOAH_16255 treC alpha,alpha-phosphotrehalase 0.38 KEDOAH_15615 adiA arginine decarboxylase — —
Escherichia coli ECRC102 0.53 NIAGMN_09750 treC alpha,alpha-phosphotrehalase 0.38 NIAGMN_10395 adiA arginine decarboxylase — —
Klebsiella michiganensis M5al 0.53 BWI76_RS02960 glucohydrolase 0.36 BWI76_RS05300 lysine decarboxylase LdcC — —
Escherichia coli ECRC98 0.53 JDDGAC_15540 treC alpha,alpha-phosphotrehalase 0.38 JDDGAC_16185 adiA arginine decarboxylase — —
Erwinia tracheiphila SCR3 0.50 LU632_RS20965 alpha,alpha-phosphotrehalase 0.24 LU632_RS05390 ornithine decarboxylase low > 74
Rhizobium sp. OAE497 0.45 ABIE40_RS29140 alpha-glucosidase 0.56 ABIE40_RS23760 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein low > 107
Azospirillum brasilense Sp245 0.28 AZOBR_RS25735 alpha-amylase 0.33 AZOBR_RS27535 amino acid decarboxylase low > 97
Variovorax sp. OAS795 0.28 ABID97_RS27345 alpha-amylase family glycosyl hydrolase 0.45 ABID97_RS16535 arginine/lysine/ornithine decarboxylase low > 91
Rhodopseudomonas palustris CGA009 0.27 TX73_024730 alpha-amylase family glycosyl hydrolase 0.32 TX73_010575 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein low > 86
Paraburkholderia sabiae LMG 24235 0.27 QEN71_RS19395 alpha-amylase family glycosyl hydrolase 0.49 QEN71_RS25000 arginine/lysine/ornithine decarboxylase — —
Pseudomonas stutzeri RCH2 0.27 Psest_3785 Glycosidases 0.80 Psest_2075 Arginine/lysine/ornithine decarboxylases low > 67
Shewanella amazonensis SB2B 0.26 Sama_1662 alpha amylase, catalytic region (RefSeq) 0.24 Sama_3334 ornithine decarboxylase (RefSeq) low > 62
Shewanella sp. ANA-3 0.25 Shewana3_2311 Alpha-glucosidase (EC 3.2.1.20) (from data) 0.24 Shewana3_3871 ornithine decarboxylase (RefSeq) low > 73
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_02777 alpha-glucosidase 0.49 H281DRAFT_00160 ornithine decarboxylase — —
Shewanella oneidensis MR-1 0.24 SO2213 oligo-1,6-glucosidase (NCBI ptt file) 0.24 SO0314 speF ornithine decarboxylase, inducible (NCBI ptt file) low > 76
Sinorhizobium meliloti 1021 0.24 SMc03064 alpha-glucosidase 0.56 SMa0682 decarboxylase (lysine, ornithine, arginine) low > 103
Variovorax sp. SCN45 0.24 GFF6332 Maltodextrin glucosidase (EC 3.2.1.20) 0.46 GFF232 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) low > 127
Azospirillum sp. SherDot2 0.19 MPMX19_04220 Oligo-1,6-glucosidase 1 0.33 MPMX19_05197 Inducible ornithine decarboxylase low > 112

Not shown: 19 genomes with orthologs for PS417_23045 only; 23 genomes with orthologs for PS417_12240 only