Conservation of cofitness between GFF3669 and GFF2133 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF3669 Integration host factor beta subunit 1.0 GFF2133 RNase E specificity factor CsrD 0.86 11
Escherichia coli ECRC62 0.99 BNILDI_20280 ihfB integration host factor subunit beta 0.86 BNILDI_02015 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC99 0.99 KEDOAH_22270 ihfB integration host factor subunit beta 0.86 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Escherichia coli BL21 0.99 ECD_00916 integration host factor (IHF), DNA-binding protein, beta subunit 0.86 ECD_03111 targeting factor for csrBC sRNA degradation — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS04830 integration host factor subunit beta 0.86 ECOLIN_RS18635 RNase E specificity factor CsrD — —
Escherichia coli BW25113 0.99 b0912 ihfB integration host factor subunit beta (NCBI) 0.86 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC98 0.99 JDDGAC_09075 ihfB integration host factor subunit beta 0.86 JDDGAC_21345 csrD RNase E specificity factor CsrD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02756 Integration host factor subunit beta 0.86 OHPLBJKB_00453 RNase E specificity factor CsrD — —
Escherichia coli ECRC100 0.99 OKFHMN_05465 ihfB integration host factor subunit beta 0.86 OKFHMN_17720 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC101 0.99 MCAODC_24855 ihfB integration host factor subunit beta 0.86 MCAODC_08240 csrD RNase E specificity factor CsrD 0.39 22
Escherichia coli ECOR27 0.99 NOLOHH_22025 ihfB integration host factor subunit beta 0.86 NOLOHH_09505 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC102 0.99 NIAGMN_03185 ihfB integration host factor subunit beta 0.86 NIAGMN_15480 csrD RNase E specificity factor CsrD low > 80
Escherichia fergusonii Becca 0.99 EFB2_03152 Integration host factor subunit beta 0.86 EFB2_00579 RNase E specificity factor CsrD — —
Escherichia coli ECOR38 0.99 HEPCGN_23060 ihfB integration host factor subunit beta 0.86 HEPCGN_16585 csrD RNase E specificity factor CsrD — —
Klebsiella michiganensis M5al 0.98 BWI76_RS09785 integration host factor subunit beta 0.78 BWI76_RS25505 RNase E specificity factor CsrD — —
Enterobacter asburiae PDN3 0.98 EX28DRAFT_2024 integration host factor, beta subunit 0.80 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain — —
Klebsiella pneumoniae MKP103 0.98 KDGMDA_17985 integration host factor subunit beta 0.78 KDGMDA_06280 Lipoprotein low > 95
Enterobacter sp. TBS_079 0.98 MPMX20_01570 Integration host factor subunit beta 0.80 MPMX20_04158 RNase E specificity factor CsrD low > 85
Serratia liquefaciens MT49 0.95 IAI46_08655 integration host factor subunit beta 0.56 IAI46_22725 RNase E specificity factor CsrD — —
Pantoea sp. MT58 0.95 IAI47_12845 integration host factor subunit beta 0.50 IAI47_02430 RNase E specificity factor CsrD — —
Pantoea agglomerans CFBP13505 P0401 0.95 PagCFBP13505_RS04485 integration host factor subunit beta 0.50 PagCFBP13505_RS11025 RNase E specificity factor CsrD — —
Erwinia amylovora T8 0.94 OLJFJH_16120 integration host factor subunit beta 0.53 OLJFJH_06905 RNase E specificity factor CsrD — —
Erwinia tracheiphila HP pepo 2.2 0.94 IJEDHG_20290 ihfB integration host factor subunit beta 0.51 IJEDHG_13555 csrD RNase E specificity factor CsrD — —
Erwinia tracheiphila SCR3 0.94 LU632_RS09810 ihfB integration host factor subunit beta 0.51 LU632_RS21455 csrD RNase E specificity factor CsrD — —
Pectobacterium carotovorum WPP14 0.94 HER17_RS12270 integration host factor subunit beta 0.52 HER17_RS20175 RNase E specificity factor CsrD — —
Rahnella sp. WP5 0.94 EX31_RS18235 integration host factor subunit beta 0.49 EX31_RS12230 RNase E specificity factor CsrD — —
Dickeya dadantii 3937 0.92 DDA3937_RS09690 integration host factor subunit beta 0.51 DDA3937_RS01425 RNase E specificity factor CsrD — —
Dickeya dianthicola 67-19 0.91 HGI48_RS09700 integration host factor subunit beta 0.51 HGI48_RS01345 RNase E specificity factor CsrD — —
Dickeya dianthicola ME23 0.91 DZA65_RS10010 integration host factor subunit beta 0.51 DZA65_RS01405 RNase E specificity factor CsrD — —
Vibrio cholerae E7946 ATCC 55056 0.83 CSW01_09575 integration host factor subunit beta 0.26 CSW01_02100 RNase E specificity factor CsrD — —
Shewanella amazonensis SB2B 0.81 Sama_1737 ihfB integration host factor subunit beta (RefSeq) 0.21 Sama_0449 regulatory protein CsrD (RefSeq) low > 62
Shewanella sp. ANA-3 0.79 Shewana3_1978 ihfB integration host factor subunit beta (RefSeq) 0.20 Shewana3_3668 regulatory protein CsrD (RefSeq) — —
Shewanella oneidensis MR-1 0.79 SO2401 ihfB integration host factor, beta subunit (NCBI ptt file) 0.22 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) — —
Shewanella loihica PV-4 0.79 Shew_1955 integration host factor, beta subunit (RefSeq) 0.20 Shew_0384 regulatory protein CsrD (RefSeq) — —
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_02040 integration host factor subunit beta 0.10 AO353_11170 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_03435 integration host factor subunit beta 0.10 AO356_10580 hypothetical protein low > 104
Pseudomonas sp. RS175 0.73 PFR28_00913 Integration host factor subunit beta 0.09 PFR28_04783 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_345 Integration host factor beta subunit 0.11 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD low > 87
Pseudomonas sp. SVBP6 0.73 COO64_RS06725 ihfB integration host factor subunit beta 0.09 COO64_RS26435 lapD cyclic di-GMP receptor LapD low > 93
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_2181 Integration host factor beta subunit 0.09 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD — —
Pseudomonas lactucae CFBP13502 0.73 GEMAOFIL_01767 Integration host factor subunit beta 0.09 GEMAOFIL_00514 RNase E specificity factor CsrD low > 93
Pseudomonas sp. DMC3 0.73 GFF4671 Integration host factor subunit beta 0.10 GFF4286 hypothetical protein low > 89
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_2515 Integration host factor beta subunit 0.10 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD — —
Pseudomonas sp. BP01 0.72 JOY50_RS16120 ihfB integration host factor subunit beta 0.09 JOY50_RS28180 lapD cyclic di-GMP receptor LapD — —

Not shown: 53 genomes with orthologs for GFF3669 only; 0 genomes with orthologs for GFF2133 only