Conservation of cofitness between GFF3115 and GFF2129 in Variovorax sp. SCN45

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF3115 Methionine ABC transporter substrate-binding protein 1.0 GFF2129 small multidrug resistance family (SMR) protein 0.62 3
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS08955 methionine ABC transporter substrate-binding protein 0.63 HSERO_RS23145 multidrug transporter low > 78
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS28475 dioxygenase 0.50 RR42_RS14705 multidrug transporter low > 128
Ralstonia solanacearum PSI07 0.58 RPSI07_RS08135 MetQ/NlpA family lipoprotein 0.49 RPSI07_RS07035 multidrug transporter low > 81
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS04530 MetQ/NlpA family lipoprotein 0.29 ABZR87_RS21585 multidrug efflux SMR transporter low > 80
Paraburkholderia graminis OAS925 0.58 ABIE53_005156 D-methionine transport system substrate-binding protein 0.61 ABIE53_001959 small multidrug resistance pump low > 113
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_01524 D-methionine transport system substrate-binding protein 0.62 H281DRAFT_00749 small multidrug resistance pump low > 103
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS02715 dioxygenase 0.59 BPHYT_RS08595 multidrug transporter low > 109
Azospirillum sp. SherDot2 0.55 MPMX19_05549 D-methionine-binding lipoprotein MetQ 0.34 MPMX19_00112 Multidrug transporter EmrE low > 112
Acidovorax sp. GW101-3H11 0.54 Ac3H11_1311 Methionine ABC transporter substrate-binding protein 0.69 Ac3H11_2948 Ethidium bromide-methyl viologen resistance protein EmrE — —
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS01570 MetQ/NlpA family lipoprotein 0.58 QEN71_RS22735 multidrug efflux SMR transporter low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF5039 Methionine ABC transporter substrate-binding protein 0.62 GFF4245 Ethidium bromide-methyl viologen resistance protein EmrE low > 90
Agrobacterium fabrum C58 0.51 Atu4489 outer membrane lipoprotein 0.56 Atu2319 quaternary ammonium compound-resistance protein low > 89
Sinorhizobium meliloti 1021 0.51 SMc03157 outer membrane lipoprotein transmembrane 0.59 SMc01523 methyl viologen/ethidium resistance transmembrane protein low > 103
Rhizobium sp. OAE497 0.49 ABIE40_RS23105 MetQ/NlpA family ABC transporter substrate-binding protein 0.61 ABIE40_RS14355 SMR family transporter low > 107
Azospirillum brasilense Sp245 0.49 AZOBR_RS19465 dioxygenase 0.40 AZOBR_RS14040 ligand-binding protein SH3 low > 97
Bosea sp. OAE506 0.46 ABIE41_RS03510 MetQ/NlpA family ABC transporter substrate-binding protein 0.62 ABIE41_RS07290 SMR family transporter low > 77
Rhodospirillum rubrum S1H 0.45 Rru_A2417 Lipoprotein YaeC (NCBI) 0.37 Rru_A3353 Small multidrug resistance protein (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.45 TX73_007330 MetQ/NlpA family ABC transporter substrate-binding protein 0.47 TX73_009120 multidrug efflux SMR transporter low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF23 Methionine ABC transporter substrate-binding protein 0.64 GFF2645 Ethidium bromide-methyl viologen resistance protein EmrE low > 78
Escherichia fergusonii Becca 0.43 EFB2_03846 D-methionine-binding lipoprotein MetQ 0.60 EFB2_02010 Multidrug transporter EmrE low > 86
Escherichia coli ECOR38 0.43 HEPCGN_08000 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.41 HEPCGN_14150 emrE QacE family quaternary ammonium compound efflux SMR transporter low > 87
Escherichia coli Nissle 1917 0.43 ECOLIN_RS01085 methionine ABC transporter substrate-binding lipoprotein MetQ 0.60 ECOLIN_RS11040 multidrug efflux SMR transporter EmrE — —
Escherichia coli BW25113 0.43 b0197 metQ DL-methionine transporter subunit (NCBI) 0.60 b0543 emrE multidrug efflux protein (NCBI) low > 76
Escherichia coli BL21 0.43 ECD_00196 DL-methionine transporter subunit 0.58 ECD_00493 DLP12 prophage; multidrug resistance protein — —
Escherichia coli ECOR27 0.43 NOLOHH_02405 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.28 NOLOHH_18215 mdtI multidrug/spermidine efflux SMR transporter subunit MdtI — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_03464 D-methionine-binding lipoprotein MetQ 0.60 OHPLBJKB_01793 Multidrug transporter EmrE low > 73
Pantoea sp. MT58 0.43 IAI47_15395 MetQ/NlpA family lipoprotein 0.31 IAI47_08635 multidrug/spermidine efflux SMR transporter subunit MdtI low > 76
Escherichia coli ECRC62 0.43 BNILDI_09265 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.28 BNILDI_17005 mdtI multidrug/spermidine efflux SMR transporter subunit MdtI low > 75
Rahnella sp. WP5 0.43 EX31_RS12890 MetQ/NlpA family lipoprotein 0.51 EX31_RS02410 multidrug DMT transporter low > 89
Escherichia coli ECRC101 0.42 MCAODC_00575 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.60 MCAODC_14880 emrE multidrug efflux SMR transporter EmrE low > 87
Escherichia coli ECRC98 0.42 JDDGAC_13655 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.60 JDDGAC_06575 emrE multidrug efflux SMR transporter EmrE low > 86
Escherichia coli ECRC102 0.42 NIAGMN_07910 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.60 NIAGMN_24935 emrE multidrug efflux SMR transporter EmrE — —
Escherichia coli ECRC100 0.42 OKFHMN_10060 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.60 OKFHMN_00790 emrE multidrug efflux SMR transporter EmrE — —
Serratia liquefaciens MT49 0.42 IAI46_20085 MetQ/NlpA family lipoprotein 0.61 IAI46_13370 QacE family quaternary ammonium compound efflux SMR transporter — —
Enterobacter asburiae PDN3 0.42 EX28DRAFT_3785 lipoprotein, YaeC family 0.31 EX28DRAFT_1508 Membrane transporters of cations and cationic drugs low > 76
Enterobacter sp. TBS_079 0.42 MPMX20_00881 D-methionine-binding lipoprotein MetQ 0.30 MPMX20_02055 Spermidine export protein MdtI low > 85
Escherichia coli ECRC99 0.42 KEDOAH_18095 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.60 KEDOAH_24875 emrE multidrug efflux SMR transporter EmrE — —
Klebsiella michiganensis M5al 0.42 BWI76_RS05355 methionine ABC transporter substrate-binding protein MetQ 0.39 BWI76_RS03545 QacE family quaternary ammonium compound efflux SMR transporter low > 92
Pectobacterium carotovorum WPP14 0.41 HER17_RS04370 MetQ/NlpA family lipoprotein 0.55 HER17_RS07420 SMR family transporter low > 75
Dickeya dadantii 3937 0.41 DDA3937_RS16855 MetQ/NlpA family lipoprotein 0.57 DDA3937_RS06260 multidrug efflux SMR transporter low > 74
Dickeya dianthicola ME23 0.40 DZA65_RS18000 MetQ/NlpA family lipoprotein 0.60 DZA65_RS06650 multidrug transporter low > 75
Dickeya dianthicola 67-19 0.40 HGI48_RS16925 MetQ/NlpA family lipoprotein 0.59 HGI48_RS06305 multidrug efflux SMR transporter low > 71
Acinetobacter radioresistens SK82 0.23 MPMX26_01857 D-methionine-binding lipoprotein MetQ 0.63 MPMX26_00935 Multidrug transporter EmrE — —

Not shown: 5 genomes with orthologs for GFF3115 only; 30 genomes with orthologs for GFF2129 only