Conservation of cofitness between GFF2462 and GFF2118 in Hydrogenophaga sp. GW460-11-11-14-LB1

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 1.0 GFF2118 Sigma-fimbriae usher protein 0.62 8
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.13 QEN71_RS00895 fimbria/pilus outer membrane usher protein low > 153
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS16855 16S rRNA methyltransferase 0.12 BPHYT_RS06245 fimbrial protein low > 109
Ralstonia solanacearum PSI07 0.39 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.14 RPSI07_RS04320 fimbrial biogenesis outer membrane usher protein low > 81
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS05880 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.14 RALBFv3_RS16555 fimbrial biogenesis outer membrane usher protein low > 76
Ralstonia solanacearum UW163 0.39 UW163_RS07745 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.14 UW163_RS17910 fimbrial biogenesis outer membrane usher protein — —
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.06 ABZR87_RS09390 fimbria/pilus outer membrane usher protein low > 80
Ralstonia solanacearum GMI1000 0.39 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.23 RS_RS13485 fimbrial biogenesis outer membrane usher protein 0.36 5
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS07110 16S rRNA methyltransferase 0.15 HSERO_RS12875 pilus assembly protein PapC low > 78
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_08050 16S rRNA methyltransferase 0.12 AO353_20290 fimbrial assembly protein low > 101
Pseudomonas putida KT2440 0.35 PP_4985 16S rRNA m3U1498 methyltransferase 0.13 PP_2362 putative usher protein low > 96
Escherichia coli ECRC62 0.34 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.06 BNILDI_04525 fimD fimbrial protein — —
Escherichia coli BL21 0.34 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 0.06 ECD_00138 putative outer membrane usher protein low > 60
Escherichia coli ECRC101 0.34 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.06 MCAODC_08770 yraJ Outer membrane usher protein YraJ — —
Escherichia coli ECRC102 0.34 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.06 NIAGMN_16020 yraJ Outer membrane usher protein YraJ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.34 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 0.06 OHPLBJKB_00557 Outer membrane usher protein YraJ low > 73
Escherichia coli BW25113 0.34 b2946 yggJ orf, hypothetical protein (VIMSS) 0.06 b0139 htrE predicted outer membrane usher protein (NCBI) low > 76
Escherichia coli ECOR38 0.34 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 0.07 HEPCGN_13580 fimD fimbrial protein low > 85
Escherichia coli ECRC99 0.34 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.06 KEDOAH_09890 yraJ Outer membrane usher protein YraJ — —
Escherichia coli ECOR27 0.34 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.07 NOLOHH_07000 fimD fimbrial protein low > 57
Escherichia fergusonii Becca 0.34 EFB2_00956 Ribosomal RNA small subunit methyltransferase E 0.09 EFB2_04239 Outer membrane usher protein HtrE — —
Escherichia coli ECRC101 0.34 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.06 OKFHMN_18260 yraJ Outer membrane usher protein YraJ — —
Escherichia coli ECRC98 0.34 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.06 JDDGAC_21885 yraJ Outer membrane usher protein YraJ — —
Rahnella sp. WP5 0.33 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.12 EX31_RS03125 fimbrial biogenesis outer membrane usher protein low > 89
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.13 PFLU_RS19025 fimbrial biogenesis outer membrane usher protein low > 109
Serratia liquefaciens MT49 0.33 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.13 IAI46_10745 fimbrial biogenesis outer membrane usher protein low > 86
Pseudomonas fluorescens SBW25 0.33 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.13 PFLU_RS19025 fimbrial biogenesis outer membrane usher protein low > 109
Pseudomonas simiae WCS417 0.33 PS417_26545 16S rRNA methyltransferase 0.13 PS417_17085 fimbrial assembly protein 0.20 18
Enterobacter sp. TBS_079 0.32 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.12 MPMX20_02792 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.32 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.12 EX28DRAFT_0668 P pilus assembly protein, porin PapC low > 76
Klebsiella michiganensis M5al 0.32 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.12 BWI76_RS18040 fimbrial assembly protein low > 92
Pantoea sp. MT58 0.31 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.13 IAI47_03255 fimbrial biogenesis outer membrane usher protein low > 76
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS04160 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.16 LRK54_RS06995 fimbria/pilus outer membrane usher protein low > 59
Rhodanobacter denitrificans MT42 0.30 LRK55_RS03930 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.16 LRK55_RS06735 fimbria/pilus outer membrane usher protein low > 63
Pectobacterium carotovorum WPP14 0.30 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.12 HER17_RS06900 fimbrial biogenesis outer membrane usher protein low > 75
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.1558.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.16 Xcc-8004.3547.1 Sigma-fimbriae usher protein — —
Lysobacter sp. OAE881 0.26 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.13 ABIE51_RS08760 fimbria/pilus outer membrane usher protein low > 62
Agrobacterium fabrum C58 0.18 Atu0657 hypothetical protein 0.14 Atu4731 fimbrial usher protein low > 89
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_0807 RNA methyltransferase, RsmE family 0.09 Ga0059261_2609 P pilus assembly protein, porin PapC low > 68

Not shown: 58 genomes with orthologs for GFF2462 only; 0 genomes with orthologs for GFF2118 only