Conservation of cofitness between EX31_RS14255 and EX31_RS03335 in Rahnella sp. WP5

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS14255 ribonuclease E activity regulator RraA 1.0 EX31_RS03335 DNA-binding transcriptional repressor 0.51 7
Serratia liquefaciens MT49 0.95 IAI46_24585 ribonuclease E activity regulator RraA 0.81 IAI46_19080 DNA-binding transcriptional repressor low > 86
Escherichia coli ECRC101 0.93 MCAODC_04250 rraA ribonuclease E activity regulator RraA 0.70 MCAODC_11185 srlR glucitol operon DNA-binding transcriptional repressor SrlR low > 87
Escherichia coli ECOR38 0.93 HEPCGN_12395 rraA ribonuclease E activity regulator RraA 0.71 HEPCGN_19860 srlR glucitol operon DNA-binding transcriptional repressor SrlR low > 87
Escherichia coli BL21 0.93 ECD_03814 ribonuclease E (RNase E) inhibitor protein 0.71 ECD_02557 sorbitol-inducible srl operon transcriptional repressor low > 61
Escherichia coli ECRC100 0.93 OKFHMN_13750 rraA ribonuclease E activity regulator RraA 0.70 OKFHMN_20660 srlR glucitol operon DNA-binding transcriptional repressor SrlR low > 80
Escherichia coli ECRC62 0.93 BNILDI_05635 rraA ribonuclease E activity regulator RraA 0.71 BNILDI_11065 srlR glucitol operon DNA-binding transcriptional repressor SrlR low > 75
Escherichia coli Nissle 1917 0.93 ECOLIN_RS22625 ribonuclease E activity regulator RraA 0.71 ECOLIN_RS15100 glucitol operon DNA-binding transcriptional repressor SrlR low > 55
Escherichia coli ECRC98 0.93 JDDGAC_17375 rraA ribonuclease E activity regulator RraA 0.70 JDDGAC_24325 srlR glucitol operon DNA-binding transcriptional repressor SrlR low > 86
Escherichia coli ECRC99 0.93 KEDOAH_14410 rraA ribonuclease E activity regulator RraA 0.70 KEDOAH_07475 srlR glucitol operon DNA-binding transcriptional repressor SrlR — —
Escherichia coli ECOR27 0.93 NOLOHH_05895 rraA ribonuclease E activity regulator RraA 0.71 NOLOHH_12505 srlR glucitol operon DNA-binding transcriptional repressor SrlR low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_04122 Regulator of ribonuclease activity A 0.71 OHPLBJKB_01027 Glucitol operon repressor low > 73
Escherichia fergusonii Becca 0.93 EFB2_04689 Regulator of ribonuclease activity A 0.71 EFB2_01217 Glucitol operon repressor low > 86
Escherichia coli BW25113 0.93 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) 0.71 b2707 srlR DNA-bindng transcriptional repressor (NCBI) low > 76
Escherichia coli ECRC102 0.93 NIAGMN_11505 rraA ribonuclease E activity regulator RraA 0.70 NIAGMN_18430 srlR glucitol operon DNA-binding transcriptional repressor SrlR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF2311 Ribonuclease E inhibitor RraA 0.71 GFF4701 Glucitol operon repressor low > 78
Enterobacter sp. TBS_079 0.91 MPMX20_04540 Regulator of ribonuclease activity A 0.70 MPMX20_03591 Glucitol operon repressor low > 85
Klebsiella michiganensis M5al 0.90 BWI76_RS00740 ribonuclease E activity regulator RraA 0.71 BWI76_RS22240 transcriptional regulator low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_4402 regulator of ribonuclease activity A 0.70 EX28DRAFT_2796 transcriptional regulator, DeoR family low > 76
Dickeya dianthicola 67-19 0.86 HGI48_RS20470 ribonuclease E activity regulator RraA 0.22 HGI48_RS02110 DeoR/GlpR transcriptional regulator low > 71
Dickeya dianthicola ME23 0.85 DZA65_RS21515 ribonuclease E activity regulator RraA 0.22 DZA65_RS02240 DeoR/GlpR transcriptional regulator low > 75
Dickeya dadantii 3937 0.85 DDA3937_RS00905 ribonuclease E activity regulator RraA 0.23 DDA3937_RS02155 DeoR/GlpR transcriptional regulator low > 74
Shewanella oneidensis MR-1 0.73 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) 0.38 SO4742 transcriptional regulator, DeoR family (NCBI ptt file) 0.34 38
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_13500 ribonuclease E activity regulator RraA 0.38 CSW01_02580 DeoR/GlpR transcriptional regulator low > 62
Shewanella sp. ANA-3 0.72 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) 0.38 Shewana3_4126 DeoR family transcriptional regulator (RefSeq) low > 73
Shewanella amazonensis SB2B 0.71 Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) 0.36 Sama_3640 DeoR family transcriptional regulator (RefSeq) low > 62
Shewanella loihica PV-4 0.70 Shew_3370 ribonuclease activity regulator protein RraA (RefSeq) 0.38 Shew_3840 DeoR family transcriptional regulator (RefSeq) — —
Alteromonas macleodii MIT1002 0.66 MIT1002_00164 Regulator of ribonuclease activity A 0.33 MIT1002_03897 Glucitol operon repressor low > 70
Pseudomonas stutzeri RCH2 0.58 Psest_2315 RraA famliy 0.37 Psest_4350 Transcriptional regulators of sugar metabolism low > 67
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_00850 ribonuclease activity regulator protein RraA 0.38 AO353_10375 XRE family transcriptional regulator low > 101
Pseudomonas sp. S08-1 0.57 OH686_01650 Ribonuclease E inhibitor RraA 0.38 OH686_12730 Transcriptional regulator of glmS gene, DeoR family low > 80
Pseudomonas putida KT2440 0.57 PP_2084 Putative regulator of ribonuclease activity 0.37 PP_5410 Transcriptional regulator, DeoR family low > 96
Pseudomonas sp. RS175 0.57 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.38 PFR28_04573 Glucitol operon repressor low > 88
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3828 Ribonuclease E inhibitor RraA 0.38 Pf1N1B4_1946 Transcriptional regulator of glmS gene, DeoR family low > 87
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_02815 ribonuclease activity regulator protein RraA 0.40 AO356_11735 XRE family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_2387 Ribonuclease E inhibitor RraA 0.40 Pf6N2E2_4216 Transcriptional regulator of glmS gene, DeoR family low > 103
Pseudomonas fluorescens SBW25 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.38 PFLU_RS30105 DeoR family transcriptional regulator low > 109
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_2092 Protein of unknown function 1935 0.39 Psyr_5118 transcriptional regulator, DeoR family low > 86
Pseudomonas simiae WCS417 0.56 PS417_21010 ribonuclease activity regulator protein RraA 0.38 PS417_28450 XRE family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.38 PFLU_RS30105 DeoR family transcriptional regulator low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_2092 Protein of unknown function 1935 0.39 Psyr_5118 transcriptional regulator, DeoR family low > 86
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.36 PfGW456L13_685 Transcriptional regulator of glmS gene, DeoR family low > 87

Not shown: 22 genomes with orthologs for EX31_RS14255 only; 3 genomes with orthologs for EX31_RS03335 only