Conservation of cofitness between ECD_02065 and ECD_04265 in Escherichia coli BL21

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02065 Yip1 family inner membrane protein 1.0 ECD_04265 DNA repair protein 0.31 19
Escherichia coli ECOR27 0.99 NOLOHH_15180 yohC Inner membrane protein YohC 1.00 NOLOHH_03520 radA DNA repair protein RadA low > 57
Escherichia coli BW25113 0.99 b2135 yohC orf, hypothetical protein (VIMSS) 1.00 b4389 radA predicted repair protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.99 ECOLIN_RS12505 Yip1 family protein 1.00 ECOLIN_RS25190 DNA repair protein RadA low > 52
Escherichia coli ECRC98 0.99 JDDGAC_27595 yohC Inner membrane protein YohC 1.00 JDDGAC_14790 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.99 OKFHMN_23640 yohC Inner membrane protein YohC 1.00 OKFHMN_11195 radA DNA repair protein RadA — —
Escherichia fergusonii Becca 0.99 EFB2_01720 Inner membrane protein YohC 1.00 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli ECRC99 0.99 KEDOAH_04545 yohC Inner membrane protein YohC 1.00 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01575 Inner membrane protein YohC 1.00 OHPLBJKB_03672 DNA repair protein RadA low > 73
Escherichia coli ECRC62 0.99 BNILDI_14130 yohC Inner membrane protein YohC 1.00 BNILDI_08075 radA DNA repair protein RadA — —
Escherichia coli ECRC102 0.99 NIAGMN_21405 yohC Inner membrane protein YohC 1.00 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia coli ECOR38 0.99 HEPCGN_02215 yohC Inner membrane protein YohC 1.00 HEPCGN_09195 radA DNA repair protein RadA low > 85
Escherichia coli ECRC101 0.99 MCAODC_14690 yohC Inner membrane protein YohC 1.00 MCAODC_01710 radA DNA repair protein RadA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF3810 Putative membrane protein 0.98 GFF1057 DNA repair protein RadA low > 78
Enterobacter sp. TBS_079 0.89 MPMX20_03104 Inner membrane protein YohC 0.98 MPMX20_00694 DNA repair protein RadA low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_0425 Protein of unknown function (DUF1282) 0.97 EX28DRAFT_3597 DNA repair protein RadA low > 76
Klebsiella michiganensis M5al 0.84 BWI76_RS19530 YIP1 family protein 0.97 BWI76_RS04165 DNA repair protein RadA low > 92
Pantoea sp. MT58 0.76 IAI47_13400 YIP1 family protein 0.93 IAI47_16345 DNA repair protein RadA low > 76
Rahnella sp. WP5 0.65 EX31_RS23820 YIP1 family protein 0.94 EX31_RS04030 DNA repair protein RadA low > 89
Serratia liquefaciens MT49 0.59 IAI46_06895 YIP1 family protein 0.93 IAI46_02945 DNA repair protein RadA 0.36 46
Pseudomonas sp. S08-1 0.53 OH686_05155 Inner membrane protein YohC 0.63 OH686_16185 DNA repair protein RadA low > 80
Pseudomonas stutzeri RCH2 0.52 Psest_3035 Protein of unknown function (DUF1282). 0.63 Psest_3401 DNA repair protein RadA low > 67
Pseudomonas putida KT2440 0.50 PP_1640 putative inner membrane protein of unknown function 0.62 PP_4644 DNA repair enzyme low > 96
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_5710 probable membrane protein YPO2362 0.64 Pf6N2E2_5076 DNA repair protein RadA low > 103
Pseudomonas sp. RS175 0.47 PFR28_03237 Inner membrane protein YohC 0.64 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_18995 hypothetical protein 0.64 AO356_15680 DNA repair protein RadA low > 104
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_3490 probable membrane protein YPO2362 0.64 Pf1N1B4_2768 DNA repair protein RadA low > 87
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_02785 hypothetical protein 0.63 AO353_13980 DNA repair protein RadA low > 101
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_2019 probable membrane protein YPO2362 0.64 PfGW456L13_1442 DNA repair protein RadA low > 87
Pseudomonas simiae WCS417 0.47 PS417_16420 membrane protein 0.64 PS417_24305 DNA repair protein RadA low > 88
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS18460 YIP1 family protein 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS18460 YIP1 family protein 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Marinobacter adhaerens HP15 0.44 HP15_754 membrane protein containing DUF1282 0.69 HP15_487 DNA repair protein RadA low > 73
Shewanella sp. ANA-3 0.38 Shewana3_2668 hypothetical protein (RefSeq) 0.77 Shewana3_1049 DNA repair protein RadA (RefSeq) low > 73
Shewanella loihica PV-4 0.37 Shew_2515 hypothetical protein (RefSeq) 0.37 Shew_2807 DNA repair protein RadA (RefSeq) low > 60
Shewanella oneidensis MR-1 0.37 SO1787 conserved hypothetical protein (NCBI ptt file) 0.77 SO1226 radA DNA repair protein RadA (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.34 Sama_1217 hypothetical protein (RefSeq) 0.76 Sama_0981 DNA repair protein RadA (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.30 MIT1002_02521 Inner membrane protein YohC 0.73 MIT1002_02706 Lon protease 2 low > 70
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_1983 Protein of unknown function (DUF1282). 0.60 B158DRAFT_0877 DNA replication and repair protein RadA low > 40

Not shown: 0 genomes with orthologs for ECD_02065 only; 63 genomes with orthologs for ECD_04265 only