Conservation of cofitness between ECD_02953 and ECD_03686 in Escherichia coli BL21

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02953 23S rRNA m(2)G1835 methyltransferase, SAM-dependent 1.0 ECD_03686 DUF484 family protein low > 61
Escherichia coli BW25113 1.00 b3084 ygjO putative enzyme (VIMSS) 1.00 b3810 yigA hypothetical protein (NCBI) low > 76
Escherichia coli ECOR38 1.00 HEPCGN_17415 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 HEPCGN_13130 yigA Uncharacterized protein YigA low > 87
Escherichia coli ECOR27 0.99 NOLOHH_10360 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 NOLOHH_06555 yigA Uncharacterized protein YigA low > 75
Escherichia coli ECRC62 0.99 BNILDI_01155 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 BNILDI_04980 yigA Uncharacterized protein YigA low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS17790 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.99 ECOLIN_RS21870 DUF484 domain-containing protein — —
Escherichia coli ECRC99 0.99 KEDOAH_09585 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 KEDOAH_13725 yigA Uncharacterized protein YigA — —
Escherichia coli ECRC101 0.99 MCAODC_09075 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.99 MCAODC_04930 yigA Uncharacterized protein YigA 0.59 6
Escherichia coli ECRC102 0.99 NIAGMN_16325 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 NIAGMN_12180 yigA Uncharacterized protein YigA — —
Escherichia coli ECRC100 0.99 OKFHMN_18560 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 OKFHMN_14425 yigA Uncharacterized protein YigA low > 80
Escherichia coli ECRC98 0.99 JDDGAC_22195 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 JDDGAC_18050 yigA Uncharacterized protein YigA low > 86
Escherichia fergusonii Becca 0.99 EFB2_00728 Ribosomal RNA large subunit methyltransferase G 1.00 EFB2_04827 hypothetical protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00618 Ribosomal RNA large subunit methyltransferase G 1.00 OHPLBJKB_04240 hypothetical protein low > 73
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3153 16S RNA G1207 methylase RsmC 0.84 EX28DRAFT_4479 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_03995 Ribosomal RNA large subunit methyltransferase G 0.83 MPMX20_04466 hypothetical protein low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF3186 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.81 GFF238 Protein of unknown function DUF484 low > 78
Klebsiella michiganensis M5al 0.71 BWI76_RS24680 23S rRNA (guanine(1835)-N(2))-methyltransferase 0.72 BWI76_RS01205 DUF484 family protein low > 92
Serratia liquefaciens MT49 0.67 IAI46_22185 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.66 IAI46_00720 DUF484 domain-containing protein low > 86
Erwinia tracheiphila SCR3 0.65 LU632_RS02335 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.60 LU632_RS24140 DUF484 domain-containing protein — —
Pectobacterium carotovorum WPP14 0.63 HER17_RS18680 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.62 HER17_RS01345 DUF484 domain-containing protein low > 75
Pantoea sp. MT58 0.62 IAI47_02950 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.66 IAI47_18405 DUF484 domain-containing protein low > 76
Dickeya dadantii 3937 0.61 DDA3937_RS02850 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.59 DDA3937_RS19895 DUF484 domain-containing protein low > 74
Rahnella sp. WP5 0.58 EX31_RS08350 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.57 EX31_RS15160 DUF484 domain-containing protein low > 89
Dickeya dianthicola 67-19 0.58 HGI48_RS02825 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.58 HGI48_RS20050 DUF484 domain-containing protein low > 71
Dickeya dianthicola ME23 0.58 DZA65_RS03000 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.58 DZA65_RS21095 DUF484 domain-containing protein low > 75
Alteromonas macleodii MIT1002 0.40 MIT1002_00689 Ribosomal RNA large subunit methyltransferase G 0.14 MIT1002_00158 hypothetical protein low > 70
Shewanella amazonensis SB2B 0.36 Sama_2548 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.14 Sama_3248 hypothetical protein (RefSeq) low > 62
Pseudomonas putida KT2440 0.36 PP_4648 Ribosomal RNA large subunit methyltransferase G 0.13 PP_5229 conserved protein of unknown function low > 96
Shewanella oneidensis MR-1 0.36 SO1097 conserved hypothetical protein (NCBI ptt file) 0.13 SO4307 conserved hypothetical protein (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_11685 ribosomal RNA large subunit methyltransferase G 0.16 CSW01_00645 DUF484 domain-containing protein low > 62
Pseudomonas sp. S08-1 0.35 OH686_16135 23S rRNA (guanine(1835)-N(2))-methyltransferase 0.13 OH686_13790 Protein of unknown function DUF484 low > 80
Shewanella sp. ANA-3 0.35 Shewana3_0932 methyltransferase small (RefSeq) 0.12 Shewana3_0392 hypothetical protein (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_13950 50S rRNA methyltransferase 0.15 AO353_09045 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1438 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.13 PfGW456L13_843 Protein of unknown function DUF484 low > 87
Pseudomonas simiae WCS417 0.34 PS417_24335 50S rRNA methyltransferase 0.14 PS417_27590 hypothetical protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS26260 class I SAM-dependent methyltransferase 0.15 PFLU_RS29275 DUF484 family protein low > 109
Pseudomonas fluorescens SBW25 0.34 PFLU_RS26260 class I SAM-dependent methyltransferase 0.15 PFLU_RS29275 DUF484 family protein low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase 0.16 Psyr_0184 Protein of unknown function DUF484 low > 86
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase 0.16 Psyr_0184 Protein of unknown function DUF484 low > 86
Pseudomonas sp. RS175 0.33 PFR28_03798 Ribosomal RNA large subunit methyltransferase G 0.14 PFR28_04377 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5071 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.15 Pf6N2E2_4417 Protein of unknown function DUF484 low > 103
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_15650 50S rRNA methyltransferase 0.14 AO356_12730 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_2763 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.14 Pf1N1B4_2172 Protein of unknown function DUF484 low > 87
Marinobacter adhaerens HP15 0.22 HP15_2265 rRNA (guanine-N2-)-methyltransferase, RsmD 0.13 HP15_249 protein containing DUF484 low > 73

Not shown: 2 genomes with orthologs for ECD_02953 only; 4 genomes with orthologs for ECD_03686 only