Conservation of cofitness between ECD_03733 and ECD_03060 in Escherichia coli BL21

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03733 transcription antitermination protein 1.0 ECD_03060 ABC transporter maintaining OM lipid asymmetry, ATP-binding protein 0.85 5
Escherichia coli ECOR38 1.00 HEPCGN_12895 rfaH transcription/translation regulatory transformer protein RfaH 1.00 HEPCGN_16850 mlaF phospholipid ABC transporter ATP-binding protein MlaF low > 85
Escherichia coli BW25113 1.00 b3842 rfaH transcriptional activator RfaH (NCBI) 1.00 b3195 yrbF predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) 0.36 41
Escherichia coli ECRC98 1.00 JDDGAC_17890 rfaH transcription/translation regulatory transformer protein RfaH 1.00 JDDGAC_21600 mlaF phospholipid ABC transporter ATP-binding protein MlaF
Escherichia coli ECRC101 1.00 OKFHMN_14265 rfaH transcription/translation regulatory transformer protein RfaH 1.00 OKFHMN_17975 mlaF phospholipid ABC transporter ATP-binding protein MlaF
Escherichia coli ECOR27 1.00 NOLOHH_06395 rfaH transcription/translation regulatory transformer protein RfaH 1.00 NOLOHH_09775 mlaF phospholipid ABC transporter ATP-binding protein MlaF low > 57
Escherichia coli ECRC99 1.00 KEDOAH_13885 rfaH transcription/translation regulatory transformer protein RfaH 1.00 KEDOAH_10175 mlaF phospholipid ABC transporter ATP-binding protein MlaF
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04211 Transcription antitermination protein RfaH 1.00 OHPLBJKB_00505 putative phospholipid import ATP-binding protein MlaF low > 73
Escherichia coli ECRC62 1.00 BNILDI_05135 rfaH transcription/translation regulatory transformer protein RfaH 1.00 BNILDI_01760 mlaF phospholipid ABC transporter ATP-binding protein MlaF
Escherichia coli ECRC102 1.00 NIAGMN_12020 rfaH transcription/translation regulatory transformer protein RfaH 1.00 NIAGMN_15735 mlaF phospholipid ABC transporter ATP-binding protein MlaF
Escherichia coli ECRC101 1.00 MCAODC_04770 rfaH transcription/translation regulatory transformer protein RfaH 1.00 MCAODC_08495 mlaF phospholipid ABC transporter ATP-binding protein MlaF
Escherichia fergusonii Becca 1.00 EFB2_04775 Transcription antitermination protein RfaH 1.00 EFB2_00628 Intermembrane phospholipid transport system ATP-binding protein MlaF low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS22150 transcription/translation regulatory transformer protein RfaH 1.00 ECOLIN_RS18390 phospholipid ABC transporter ATP-binding protein MlaF low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF267 Transcriptional activator RfaH 0.89 GFF2939 Uncharacterized ABC transporter, ATP-binding protein YrbF low > 78
Enterobacter asburiae PDN3 0.85 EX28DRAFT_4505 transcription elongation factor/antiterminator RfaH 0.85 EX28DRAFT_3249 ABC-type transport system involved in resistance to organic solvents, ATPase component low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_04440 Transcription antitermination protein RfaH 0.84 MPMX20_04101 Intermembrane phospholipid transport system ATP-binding protein MlaF low > 85
Klebsiella michiganensis M5al 0.84 BWI76_RS01340 transcription/translation regulatory transformer protein RfaH 0.83 BWI76_RS25230 phospholipid ABC transporter ATP-binding protein MlaF
Pantoea sp. MT58 0.76 IAI47_18250 transcription/translation regulatory transformer protein RfaH 0.79 IAI47_17145 phospholipid ABC transporter ATP-binding protein MlaF low > 76
Serratia liquefaciens MT49 0.76 IAI46_01105 transcription/translation regulatory transformer protein RfaH 0.77 IAI46_22430 phospholipid ABC transporter ATP-binding protein MlaF low > 86
Pectobacterium carotovorum WPP14 0.75 HER17_RS20570 transcription/translation regulatory transformer protein RfaH 0.73 HER17_RS20025 phospholipid ABC transporter ATP-binding protein MlaF low > 75
Erwinia tracheiphila SCR3 0.74 LU632_RS23970 rfaH transcription/translation regulatory transformer protein RfaH 0.78 LU632_RS21245 mlaF phospholipid ABC transporter ATP-binding protein MlaF low > 74
Dickeya dianthicola 67-19 0.73 HGI48_RS00935 transcription/translation regulatory transformer protein RfaH 0.74 HGI48_RS01480 phospholipid ABC transporter ATP-binding protein MlaF low > 71
Dickeya dianthicola ME23 0.73 DZA65_RS00995 transcription/translation regulatory transformer protein RfaH 0.74 DZA65_RS01545 phospholipid ABC transporter ATP-binding protein MlaF 0.59 33
Rahnella sp. WP5 0.73 EX31_RS14590 transcription/translation regulatory transformer protein RfaH 0.78 EX31_RS12435 phospholipid ABC transporter ATP-binding protein MlaF low > 89
Dickeya dadantii 3937 0.73 DDA3937_RS20290 transcription/translation regulatory transformer protein RfaH 0.76 DDA3937_RS01565 phospholipid ABC transporter ATP-binding protein MlaF low > 74
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_05050 transcription/translation regulatory transformer protein RfaH 0.67 CSW01_12775 phospholipid ABC transporter ATP-binding protein MlaF low > 62
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_5950 Transcriptional activator RfaH 0.59 Pf1N1B4_1074 Uncharacterized ABC transporter, ATP-binding protein YrbF
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS02425 transcriptional activator 0.53 HSERO_RS20400 toluene ABC transporter ATP-binding protein
Pseudomonas stutzeri RCH2 0.29 Psest_2605 transcriptional activator RfaH 0.61 Psest_3307 ABC-type transport system involved in resistance to organic solvents, ATPase component low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_3226 Transcriptional activator RfaH 0.61 Psyr_4141 ABC transporter low > 86
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_3226 Transcriptional activator RfaH 0.61 Psyr_4141 ABC transporter low > 86
Shewanella oneidensis MR-1 0.28 SO3194 transcriptional activator rfaH, putative (NCBI ptt file) 0.65 SO3954 ABC transporter, ATP-binding protein, putative (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.28 Sama_2265 transcriptional activator rfaH, putative (RefSeq) 0.68 Sama_3081 ABC transporter, ATP-binding protein, putative (RefSeq) low > 62
Shewanella sp. ANA-3 0.28 Shewana3_1374 transcription antitermination protein nusG (RefSeq) 0.65 Shewana3_0678 ABC transporter related (RefSeq) low > 73
Shewanella loihica PV-4 0.27 Shew_1398 NusG antitermination factor (RefSeq) 0.62 Shew_3304 ABC transporter-related protein (RefSeq) low > 60
Marinobacter adhaerens HP15 0.26 HP15_p187g93 transcriptional activator RfaH 0.62 HP15_2436 toluene tolerance ABC efflux transporter, ATP-binding protein low > 73
Magnetospirillum magneticum AMB-1 0.19 AMB_RS00245 transcriptional activator RfaH 0.33 AMB_RS01675 ABC transporter ATP-binding protein
Castellaniella sp019104865 MT123 0.16 ABCV34_RS12845 transcription termination/antitermination NusG family protein 0.41 ABCV34_RS11180 ABC transporter ATP-binding protein

Not shown: 2 genomes with orthologs for ECD_03733 only; 45 genomes with orthologs for ECD_03060 only