Conservation of cofitness between ECD_02883 and ECD_02838 in Escherichia coli BL21

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02883 transcriptional activator of yqhD 1.0 ECD_02838 putative type II secretion protein GspD 0.64 29
Escherichia coli ECOR38 1.00 HEPCGN_17815 yqhC DNA-binding transcriptional regulator YqhC 1.00 HEPCGN_18050 gspD general secretion pathway protein D low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00691 HTH-type transcriptional activator RhaS 1.00 OHPLBJKB_00739 Type II secretion system protein D low > 73
Escherichia coli ECRC98 1.00 JDDGAC_22585 yqhC DNA-binding transcriptional regulator YqhC 0.37 JDDGAC_30295 etpD variant type II secretion system secretin EtpD low > 86
Escherichia coli ECRC101 1.00 MCAODC_09465 yqhC DNA-binding transcriptional regulator YqhC 0.37 MCAODC_15265 etpD variant type II secretion system secretin EtpD low > 87
Escherichia coli ECRC100 1.00 OKFHMN_18950 yqhC DNA-binding transcriptional regulator YqhC 0.37 OKFHMN_00285 etpD variant type II secretion system secretin EtpD low > 80
Escherichia coli ECRC102 1.00 NIAGMN_16715 yqhC DNA-binding transcriptional regulator YqhC 0.37 NIAGMN_28605 etpD variant type II secretion system secretin EtpD — —
Escherichia coli BW25113 1.00 b3010 yqhC putative ARAC-type regulatory protein (VIMSS) 0.38 b3325 yheF putative general protein secretion protein (VIMSS) low > 76
Escherichia fergusonii Becca 0.99 EFB2_00800 HTH-type transcriptional activator RhaS 0.99 EFB2_00845 Secretin GspD 2 low > 86
Escherichia coli ECOR27 0.99 NOLOHH_10725 yqhC DNA-binding transcriptional regulator YqhC 1.00 NOLOHH_10975 gspD general secretion pathway protein D low > 75
Escherichia coli Nissle 1917 0.93 ECOLIN_RS17325 DNA-binding transcriptional regulator YqhC 1.00 ECOLIN_RS17085 type II secretion system secretin GspD low > 55
Klebsiella michiganensis M5al 0.83 BWI76_RS24295 AraC family transcriptional regulator 0.38 BWI76_RS05090 type II secretion system protein GspD 0.14 20
Enterobacter asburiae PDN3 0.77 EX28DRAFT_3048 AraC-type DNA-binding domain-containing proteins 0.37 EX28DRAFT_2079 type II secretion system protein D low > 76
Enterobacter sp. TBS_079 0.75 MPMX20_03854 HTH-type transcriptional activator RhaS 0.35 MPMX20_01515 Putative secretin GspD low > 85
Rahnella sp. WP5 0.56 EX31_RS08035 AraC family transcriptional regulator 0.39 EX31_RS16165 type II secretion system secretin GspD low > 89
Dickeya dianthicola ME23 0.54 DZA65_RS01775 AraC family transcriptional regulator 0.23 DZA65_RS16270 type II secretion system secretin GspD low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS01700 AraC family transcriptional regulator 0.23 HGI48_RS15450 type II secretion system secretin GspD low > 71
Dickeya dadantii 3937 0.53 DDA3937_RS01805 AraC family transcriptional regulator 0.24 DDA3937_RS12700 type II secretion system secretin GspD low > 74
Pectobacterium carotovorum WPP14 0.51 HER17_RS19700 AraC family transcriptional regulator 0.38 HER17_RS06685 type II secretion system secretin GspD low > 75
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07615 AraC family transcriptional regulator 0.20 AO356_09345 type II secretion system protein GspD low > 104
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_3409 Hypothetical transcriptional regulator YqhC 0.21 Pf6N2E2_651 General secretion pathway protein D low > 103
Pseudomonas sp. RS175 0.37 PFR28_00040 HTH-type transcriptional activator RhaS 0.15 PFR28_01750 Secretin XcpQ low > 88
Pseudomonas simiae WCS417 0.34 PS417_13365 AraC family transcriptional regulator 0.19 PS417_11295 general secretion pathway protein GspD low > 88
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_01245 AraC family transcriptional regulator 0.19 AO353_12545 type II secretion system protein GspD low > 101
Ralstonia sp. UNC404CL21Col 0.32 ABZR87_RS03645 AraC family transcriptional regulator 0.15 ABZR87_RS03450 type II secretion system secretin GspD low > 80
Shewanella loihica PV-4 0.32 Shew_0071 AraC family transcriptional regulator (RefSeq) 0.45 Shew_3619 general secretion pathway protein D (RefSeq) low > 60
Pseudomonas fluorescens SBW25 0.32 PFLU_RS22930 AraC family transcriptional regulator 0.20 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS22930 AraC family transcriptional regulator 0.20 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2133 Transcriptional regulator, AraC family 0.20 PfGW456L13_266 General secretion pathway protein D low > 87
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_1993 transcriptional regulator, AraC family 0.08 Psyr_3141 type II and III secretion system protein:NolW-like protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_1993 transcriptional regulator, AraC family 0.08 Psyr_3141 type II and III secretion system protein:NolW-like protein low > 86
Pseudomonas sp. S08-1 0.24 OH686_18355 Transcriptional regulator, AraC family 0.26 OH686_11840 type II secretion system protein D low > 80
Pseudomonas stutzeri RCH2 0.23 Psest_1393 AraC-type DNA-binding domain-containing proteins 0.23 Psest_2577 general secretion pathway protein D low > 67
Ralstonia solanacearum PSI07 0.23 RPSI07_RS04190 AraC family transcriptional regulator 0.16 RPSI07_RS09520 type II secretion system protein GspD 0.64 5
Variovorax sp. OAS795 0.22 ABID97_RS28720 AraC family transcriptional regulator 0.18 ABID97_RS06950 type II secretion system secretin GspD low > 91
Shewanella sp. ANA-3 0.22 Shewana3_1698 AraC family transcriptional regulator (RefSeq) 0.48 Shewana3_0151 general secretion pathway protein D (RefSeq) low > 73
Variovorax sp. SCN45 0.22 GFF141 Transcriptional regulator, AraC family 0.18 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) low > 127
Shewanella amazonensis SB2B 0.22 Sama_2712 AraC family transcriptional regulator (RefSeq) 0.46 Sama_0169 type II and III secretion system protein (RefSeq) low > 62
Xanthomonas campestris pv. campestris strain 8004 0.22 Xcc-8004.1800.1 hypothetical protein 0.21 Xcc-8004.942.1 hypothetical protein low > 74
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS20725 AraC family transcriptional regulator 0.16 RALBFv3_RS07740 type II secretion system protein GspD low > 76

Not shown: 16 genomes with orthologs for ECD_02883 only; 17 genomes with orthologs for ECD_02838 only