Conservation of cofitness between ECD_00419 and ECD_01459 in Escherichia coli BL21

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00419 DUF454 family inner membrane protein 1.0 ECD_01459 putative oxidoreductase 0.57 3
Escherichia coli ECRC100 1.00 OKFHMN_08175 ybaN DUF454 domain-containing protein 0.99 OKFHMN_01245 ydeP acid resistance putative oxidoreductase YdeP low > 80
Escherichia coli ECOR38 1.00 HEPCGN_06790 ybaN DUF454 domain-containing protein 1.00 HEPCGN_26555 ydeP acid resistance putative oxidoreductase YdeP low > 87
Escherichia coli ECRC62 1.00 BNILDI_22525 ybaN DUF454 domain-containing protein 0.99 BNILDI_17375 ydeP acid resistance putative oxidoreductase YdeP low > 75
Escherichia coli ECRC98 1.00 JDDGAC_11825 ybaN DUF454 domain-containing protein 0.99 JDDGAC_03735 ydeP acid resistance putative oxidoreductase YdeP low > 86
Escherichia coli BW25113 1.00 b0468 ybaN conserved inner membrane protein (NCBI) 1.00 b1501 YdeP putative oxidoreductase, major subunit, acid resistance protein (Katherine Huang) low > 76
Escherichia coli ECRC102 1.00 NIAGMN_06230 ybaN DUF454 domain-containing protein 0.99 NIAGMN_25375 ydeP acid resistance putative oxidoreductase YdeP — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03206 Inner membrane protein YbaN 1.00 OHPLBJKB_02216 Protein YdeP low > 73
Escherichia coli ECOR27 1.00 NOLOHH_01105 ybaN DUF454 domain-containing protein 1.00 NOLOHH_18885 ydeP acid resistance putative oxidoreductase YdeP low > 75
Escherichia coli ECRC99 1.00 KEDOAH_19790 ybaN DUF454 domain-containing protein 0.99 KEDOAH_27195 ydeP acid resistance putative oxidoreductase YdeP — —
Escherichia fergusonii Becca 0.99 EFB2_03590 Inner membrane protein YbaN 0.99 EFB2_02499 Protein YdeP low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS02785 DUF454 family protein 0.99 ECOLIN_RS08610 acid resistance putative oxidoreductase YdeP — —
Escherichia coli ECRC101 0.99 MCAODC_27400 ybaN DUF454 domain-containing protein 0.99 MCAODC_16695 ydeP acid resistance putative oxidoreductase YdeP low > 87
Enterobacter sp. TBS_079 0.80 MPMX20_01070 Inner membrane protein YbaN 0.53 MPMX20_02683 Protein YdeP low > 85
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2490 Uncharacterized protein conserved in bacteria 0.53 EX28DRAFT_0785 oxidoreductase alpha (molybdopterin) subunit low > 76
Klebsiella michiganensis M5al 0.74 BWI76_RS06810 hypothetical protein 0.55 BWI76_RS13875 CbbBc protein low > 92
Pantoea sp. MT58 0.62 IAI47_14485 DUF454 family protein 0.61 IAI47_21415 FdhF/YdeP family oxidoreductase low > 76
Rahnella sp. WP5 0.62 EX31_RS22500 DUF454 family protein 0.46 EX31_RS07150 FdhF/YdeP family oxidoreductase low > 89
Dickeya dadantii 3937 0.56 DDA3937_RS05770 DUF454 family protein 0.44 DDA3937_RS12475 FdhF/YdeP family oxidoreductase low > 74
Pectobacterium carotovorum WPP14 0.56 HER17_RS15715 DUF454 family protein 0.45 HER17_RS09435 FdhF/YdeP family oxidoreductase low > 75
Serratia liquefaciens MT49 0.55 IAI46_05220 DUF454 family protein 0.45 IAI46_13855 FdhF/YdeP family oxidoreductase 0.43 36
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_3740 Protein of unknown function DUF454 0.48 Psyr_0015 Oxidoreductase alpha (molybdopterin) subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_3740 Protein of unknown function DUF454 0.48 Psyr_0015 Oxidoreductase alpha (molybdopterin) subunit low > 86
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS21930 DUF454 domain-containing protein 0.47 PFLU_RS01360 FdhF/YdeP family oxidoreductase low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS21930 DUF454 domain-containing protein 0.47 PFLU_RS01360 FdhF/YdeP family oxidoreductase low > 109
Shewanella sp. ANA-3 0.37 Shewana3_2448 hypothetical protein (RefSeq) 0.43 Shewana3_1872 oxidoreductase alpha (molybdopterin) subunit (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_18420 hypothetical protein 0.47 AO353_11825 CbbBc protein low > 101
Pseudomonas simiae WCS417 0.37 PS417_19960 membrane protein 0.48 PS417_01265 CbbBc protein low > 88
Pseudomonas putida KT2440 0.37 PP_4518 conserved protein of unknown function 0.47 PP_0256 putative oxidoreductase low > 96
Pseudomonas fluorescens FW300-N1B4 0.37 Pf1N1B4_3531 FIG039061: hypothetical protein related to heme utilization 0.46 Pf1N1B4_1674 Putative formate dehydrogenase oxidoreductase protein low > 87
Pseudomonas stutzeri RCH2 0.36 Psest_1866 Uncharacterized protein conserved in bacteria 0.46 Psest_2422 oxidoreductase alpha (molybdopterin) subunit low > 67
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_2647 FIG039061: hypothetical protein related to heme utilization 0.48 Pf6N2E2_3891 Putative formate dehydrogenase oxidoreductase protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_04060 hypothetical protein 0.47 AO356_10105 CbbBc protein low > 104
Pseudomonas sp. RS175 0.35 PFR28_00786 Inner membrane protein YbaN 0.47 PFR28_04881 Protein YdeP low > 88
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_4425 FIG039061: hypothetical protein related to heme utilization 0.46 PfGW456L13_409 Putative formate dehydrogenase oxidoreductase protein low > 87
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_2077 Uncharacterized protein conserved in bacteria 0.46 Ga0059261_3868 oxidoreductase alpha (molybdopterin) subunit low > 68
Bosea sp. OAE506 0.31 ABIE41_RS15805 YbaN family protein 0.41 ABIE41_RS15285 FdhF/YdeP family oxidoreductase — —
Agrobacterium fabrum C58 0.31 Atu2457 hypothetical protein 0.53 Atu4776 formate dehydrogenase alpha subunit low > 89
Variovorax sp. SCN45 0.27 GFF5173 Hypothetical protein DUF454 0.54 GFF6598 Putative formate dehydrogenase oxidoreductase protein — —
Rhizobium sp. OAE497 0.27 ABIE40_RS23650 YbaN family protein 0.43 ABIE40_RS28550 FdhF/YdeP family oxidoreductase low > 107
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.843.1 FIG039061: hypothetical protein related to heme utilization 0.47 Xcc-8004.2195.1 Putative formate dehydrogenase oxidoreductase protein 0.33 6
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS22710 hypothetical protein 0.48 HSERO_RS08385 anaerobic (selenocysteine-containing) formate dehydrogenase low > 78

Not shown: 18 genomes with orthologs for ECD_00419 only; 19 genomes with orthologs for ECD_01459 only