Conservation of cofitness between ECD_00806 and ECD_00901 in Escherichia coli BL21

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 1.0 ECD_00901 putative isochorismatase family hydrolase 0.43 16
Escherichia coli BW25113 1.00 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 1.00 b0897 ycaC predicted hydrolase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 1.00 OHPLBJKB_02771 putative hydrolase YcaC low > 73
Escherichia coli ECRC99 1.00 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 KEDOAH_22205 ycaC putative hydrolase YcaC — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 1.00 ECOLIN_RS04770 isochorismate family cysteine hydrolase YcaC — —
Escherichia coli ECRC102 1.00 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 NIAGMN_03250 ycaC putative hydrolase YcaC — —
Escherichia coli ECOR27 1.00 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 NOLOHH_22100 ycaC putative hydrolase YcaC low > 75
Escherichia coli ECRC98 1.00 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 JDDGAC_09340 ycaC putative hydrolase YcaC 0.51 45
Escherichia coli ECOR38 1.00 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.99 HEPCGN_22980 ycaC putative hydrolase YcaC low > 87
Escherichia coli ECRC100 1.00 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 OKFHMN_05530 ycaC putative hydrolase YcaC low > 80
Escherichia coli ECRC101 1.00 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 MCAODC_24920 ycaC putative hydrolase YcaC low > 87
Escherichia coli ECRC62 1.00 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 BNILDI_20355 ycaC putative hydrolase YcaC low > 75
Escherichia fergusonii Becca 1.00 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 1.00 EFB2_03164 putative hydrolase YcaC low > 86
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.41 EX28DRAFT_1901 Amidases related to nicotinamidase low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.41 MPMX20_01711 putative hydrolase YcaC low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.43 GFF336 Nicotinamidase family protein YcaC low > 78
Klebsiella michiganensis M5al 0.85 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase 0.91 BWI76_RS13305 hydrolase — —
Serratia liquefaciens MT49 0.71 IAI46_08285 serine hydrolase 0.88 IAI46_04570 hydrolase low > 86
Pseudomonas putida KT2440 0.42 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.88 PP_0711 putative hydrolase low > 96
Pseudomonas sp. RS175 0.42 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.77 PFR28_02644 putative hydrolase YcaC low > 88
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.77 PFLU_RS26805 hydrolase low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.77 PFLU_RS26805 hydrolase low > 109
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.89 AO356_09075 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.90 Pf1N1B4_125 Nicotinamidase family protein YcaC — —
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.89 Pf6N2E2_3698 Nicotinamidase family protein YcaC low > 103
Pseudomonas simiae WCS417 0.41 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.78 PS417_25180 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.90 AO353_19675 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.88 PfGW456L13_2405 Nicotinamidase family protein YcaC — —
Pseudomonas sp. S08-1 0.41 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.86 OH686_18480 Nicotinamidase family protein YcaC low > 80
Lysobacter sp. OAE881 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.27 ABIE51_RS02635 hydrolase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.31 Xcc-8004.2400.1 hypothetical protein low > 74
Variovorax sp. SCN45 0.37 GFF1728 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.25 GFF4500 FIG002283: Isochorismatase family protein low > 127
Dechlorosoma suillum PS 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.12 Dsui_2311 isochorismate hydrolase — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.31 QEN71_RS37400 hydrolase low > 153
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS02415 cytochrome C550 0.29 BPHYT_RS30405 hydrolase — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.31 RPSI07_RS03435 isochorismatase hydrolase — —
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.25 ABZR87_RS06115 hydrolase low > 80
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS01680 cytochrome C550 0.32 RR42_RS07715 hydrolase low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.17 GFF4881 Isochorismatase (EC 3.3.2.1) — —
Variovorax sp. OAS795 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.25 ABID97_RS29075 hydrolase low > 91
Azospirillum sp. SherDot2 0.29 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC 0.31 MPMX19_03628 putative hydrolase YcaC — —
Magnetospirillum magneticum AMB-1 0.28 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase 0.31 AMB_RS16695 isochorismatase 0.56 2
Bosea sp. OAE506 0.27 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.30 ABIE41_RS18935 hydrolase — —
Rhodopseudomonas palustris CGA009 0.27 TX73_014370 D-alanyl-D-alanine carboxypeptidase 0.27 TX73_010820 hydrolase low > 86
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase 0.44 Ga0059261_3249 Amidases related to nicotinamidase — —
Rhizobium sp. OAE497 0.21 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein 0.23 ABIE40_RS29365 hydrolase low > 107

Not shown: 28 genomes with orthologs for ECD_00806 only; 3 genomes with orthologs for ECD_00901 only