Conservation of cofitness between ECD_01084 and ECD_00204 in Escherichia coli BL21

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01084 DUF177 family protein 1.0 ECD_00204 putative membrane-bound lytic murein transglycosylase D 0.68 58
Escherichia coli ECOR38 1.00 HEPCGN_23880 yceD 23S rRNA accumulation protein YceD 0.90 HEPCGN_07925 mltD murein transglycosylase D low > 87
Escherichia coli Nissle 1917 1.00 ECOLIN_RS06290 23S rRNA accumulation protein YceD 1.00 ECOLIN_RS01155 murein transglycosylase D low > 55
Escherichia coli ECRC98 1.00 JDDGAC_07260 yceD 23S rRNA accumulation protein YceD 0.90 JDDGAC_13580 mltD murein transglycosylase D low > 86
Escherichia coli ECRC99 1.00 KEDOAH_24155 yceD 23S rRNA accumulation protein YceD 0.90 KEDOAH_18170 mltD murein transglycosylase D — —
Escherichia coli ECRC101 1.00 MCAODC_22960 yceD 23S rRNA accumulation protein YceD 0.90 MCAODC_00500 mltD murein transglycosylase D low > 87
Escherichia coli BW25113 1.00 b1088 yceD hypothetical protein (NCBI) 1.00 b0211 mltD predicted membrane-bound lytic murein transglycosylase D (NCBI) low > 76
Escherichia fergusonii Becca 1.00 EFB2_02887 Large ribosomal RNA subunit accumulation protein YceD 0.90 EFB2_03832 Membrane-bound lytic murein transglycosylase D low > 86
Escherichia coli ECRC100 1.00 OKFHMN_03600 yceD 23S rRNA accumulation protein YceD 0.90 OKFHMN_09985 mltD murein transglycosylase D low > 80
Escherichia coli ECRC62 1.00 BNILDI_19290 yceD 23S rRNA accumulation protein YceD 0.90 BNILDI_09340 mltD murein transglycosylase D low > 75
Escherichia coli ECOR27 1.00 NOLOHH_21130 yceD 23S rRNA accumulation protein YceD 0.90 NOLOHH_02330 mltD murein transglycosylase D low > 75
Escherichia coli ECRC102 1.00 NIAGMN_24230 yceD 23S rRNA accumulation protein YceD 0.90 NIAGMN_07835 mltD murein transglycosylase D — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02578 Large ribosomal RNA subunit accumulation protein YceD 0.90 OHPLBJKB_03450 Membrane-bound lytic murein transglycosylase D 0.55 12
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF3370 COG1399 protein, clustered with ribosomal protein L32p 0.83 GFF4043 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 78
Enterobacter asburiae PDN3 0.94 EX28DRAFT_1841 Predicted metal-binding, possibly nucleic acid-binding protein 0.87 EX28DRAFT_2683 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_01768 Large ribosomal RNA subunit accumulation protein YceD 0.88 MPMX20_00896 Membrane-bound lytic murein transglycosylase D low > 85
Klebsiella michiganensis M5al 0.87 BWI76_RS11065 hypothetical protein 0.86 BWI76_RS05435 murein transglycosylase D — —
Rahnella sp. WP5 0.85 EX31_RS24410 23S rRNA accumulation protein YceD 0.64 EX31_RS21205 murein transglycosylase D 0.70 84
Pectobacterium carotovorum WPP14 0.84 HER17_RS08625 23S rRNA accumulation protein YceD 0.64 HER17_RS05450 murein transglycosylase D low > 75
Erwinia tracheiphila SCR3 0.84 LU632_RS14845 yceD 23S rRNA accumulation protein YceD 0.65 LU632_RS01075 mltD murein transglycosylase D low > 74
Dickeya dadantii 3937 0.84 DDA3937_RS13145 23S rRNA accumulation protein YceD 0.64 DDA3937_RS16065 murein transglycosylase D low > 74
Dickeya dianthicola ME23 0.83 DZA65_RS13680 23S rRNA accumulation protein YceD 0.63 DZA65_RS17270 murein transglycosylase D — —
Dickeya dianthicola 67-19 0.82 HGI48_RS13210 23S rRNA accumulation protein YceD 0.63 HGI48_RS16185 murein transglycosylase D low > 71
Pantoea sp. MT58 0.79 IAI47_12095 23S rRNA accumulation protein YceD 0.68 IAI47_15345 murein transglycosylase D — —
Serratia liquefaciens MT49 0.73 IAI46_09765 23S rRNA accumulation protein YceD 0.63 IAI46_04130 murein transglycosylase D — —
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_10120 23S rRNA accumulation protein YceD 0.31 CSW01_11400 lytic transglycosylase — —
Alteromonas macleodii MIT1002 0.46 MIT1002_01728 hypothetical protein 0.32 MIT1002_02495 Membrane-bound lytic murein transglycosylase D precursor — —
Shewanella oneidensis MR-1 0.44 SO2781 conserved hypothetical protein (NCBI ptt file) 0.29 SO2564 transglycosylase, Slt family (NCBI ptt file) — —
Shewanella loihica PV-4 0.44 Shew_1598 hypothetical protein (RefSeq) 0.30 Shew_2115 lytic transglycosylase, catalytic (RefSeq) — —
Shewanella sp. ANA-3 0.44 Shewana3_2563 hypothetical protein (RefSeq) 0.29 Shewana3_2370 MltD domain-containing protein (RefSeq) — —
Pseudomonas stutzeri RCH2 0.27 Psest_1684 Predicted metal-binding, possibly nucleic acid-binding protein 0.30 Psest_2070 FOG: LysM repeat — —
Pseudomonas sp. RS175 0.22 PFR28_03014 Large ribosomal RNA subunit accumulation protein YceD 0.34 PFR28_01551 Membrane-bound lytic murein transglycosylase D — —
Pseudomonas putida KT2440 0.19 PP_1910 conserved protein of unknown function 0.32 PP_4145 Membrane-bound lytic murein transglycosylase D — —
Pseudomonas fluorescens SBW25-INTG 0.18 PFLU_RS23075 hypothetical protein 0.33 PFLU_RS12905 transglycosylase SLT domain-containing protein — —
Pseudomonas fluorescens SBW25 0.18 PFLU_RS23075 hypothetical protein 0.33 PFLU_RS12905 transglycosylase SLT domain-containing protein low > 109
Kangiella aquimarina DSM 16071 0.17 B158DRAFT_1758 Predicted metal-binding, possibly nucleic acid-binding protein 0.29 B158DRAFT_1060 FOG: LysM repeat low > 40
Pseudomonas simiae WCS417 0.17 PS417_21460 metal-binding protein 0.33 PS417_12215 lytic transglycosylase — —
Pseudomonas fluorescens FW300-N2E3 0.17 AO353_01385 metal-binding protein 0.33 AO353_23485 lytic transglycosylase — —
Pseudomonas fluorescens FW300-N1B4 0.17 Pf1N1B4_455 COG1399 protein, clustered with ribosomal protein L32p 0.32 Pf1N1B4_4595 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) — —
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_2101 COG1399 protein, clustered with ribosomal protein L32p 0.34 PfGW456L13_3341 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) — —
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_20145 metal-binding protein 0.34 AO356_24475 lytic transglycosylase — —
Pseudomonas fluorescens FW300-N2E2 0.16 Pf6N2E2_5948 COG1399 protein, clustered with ribosomal protein L32p 0.34 Pf6N2E2_586 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) — —
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_1643 Protein of unknown function DUF177 0.34 Psyr_1760 Peptidoglycan-binding LysM:SLT:MLTD_N — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_1643 Protein of unknown function DUF177 0.34 Psyr_1760 Peptidoglycan-binding LysM:SLT:MLTD_N — —

Not shown: 8 genomes with orthologs for ECD_01084 only; 8 genomes with orthologs for ECD_00204 only