Conservation of cofitness between CSW01_03400 and CSW01_18165 in Vibrio cholerae E7946 ATCC 55056

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 1.0 CSW01_18165 hypothetical protein 0.52 7
Pectobacterium carotovorum WPP14 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.26 HER17_RS02775 protein CreA low > 75
Klebsiella michiganensis M5al 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.26 BWI76_RS04210 hypothetical protein low > 92
Escherichia coli ECRC98 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.25 JDDGAC_14740 creA protein CreA low > 87
Escherichia coli BW25113 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.25 b4397 creA hypothetical protein (NCBI) low > 76
Escherichia coli ECRC99 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.25 KEDOAH_17010 creA protein CreA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.25 OHPLBJKB_03664 hypothetical protein low > 74
Escherichia coli ECRC102 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.25 NIAGMN_08995 creA protein CreA low > 80
Escherichia coli Nissle 1917 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.25 ECOLIN_RS25235 protein CreA low > 55
Escherichia coli ECOR38 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.25 HEPCGN_09150 creA protein CreA low > 88
Escherichia coli ECRC100 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.25 OKFHMN_11145 creA protein CreA low > 79
Escherichia coli BL21 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.25 ECD_04273 putative periplasmic protein low > 61
Escherichia fergusonii Becca 0.67 EFB2_00657 tRNA pseudouridine synthase B 0.25 EFB2_04047 hypothetical protein low > 86
Escherichia coli ECRC101 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.25 MCAODC_01660 creA protein CreA low > 87
Escherichia coli ECOR27 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.25 NOLOHH_03475 creA protein CreA low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.25 GFF1065 Conserved uncharacterized protein CreA low > 78
Escherichia coli ECRC62 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.25 BNILDI_08125 creA protein CreA low > 75
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.25 EX28DRAFT_3607 Uncharacterized protein conserved in bacteria low > 76
Rahnella sp. WP5 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.25 EX31_RS03960 protein CreA low > 89
Shewanella sp. ANA-3 0.64 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.56 Shewana3_2415 CreA family protein (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.56 Shew_1788 CreA family protein (RefSeq) — —
Shewanella amazonensis SB2B 0.63 Sama_0963 pseudouridylate synthase (RefSeq) 0.57 Sama_2009 creA protein (RefSeq) low > 62
Pseudomonas sp. BP01 0.46 JOY50_RS26845 truB tRNA pseudouridine(55) synthase TruB 0.22 JOY50_RS24730 CreA family protein low > 84
Pseudomonas sp. RS175 0.45 PFR28_00092 tRNA pseudouridine synthase B 0.22 PFR28_03768 hypothetical protein — —
Pseudomonas segetis P6 0.44 MPMX49_01203 tRNA pseudouridine synthase B 0.25 MPMX49_03943 hypothetical protein low > 75
Pseudomonas simiae WCS417 0.44 PS417_23960 pseudouridine synthase 0.21 PS417_23540 CreA — —
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS17985 tRNA pseudouridine synthase B 0.21 HSERO_RS12925 catabolite repression CreA protein low > 78
Ralstonia solanacearum GMI1000 0.41 RS_RS06470 tRNA pseudouridine(55) synthase TruB 0.22 RS_RS07400 hypothetical protein low > 80
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS12835 tRNA pseudouridine synthase B 0.23 RR42_RS28965 hypothetical protein low > 128
Paraburkholderia graminis OAS925 0.40 ABIE53_001832 tRNA pseudouridine55 synthase 0.23 ABIE53_003071 CreA protein low > 113
Ralstonia solanacearum UW163 0.40 UW163_RS13150 tRNA pseudouridine(55) synthase TruB 0.21 UW163_RS14045 crea protein — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB 0.21 RPSI07_RS16785 hypothetical protein low > 81
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB 0.21 RALBFv3_RS00715 crea protein low > 76
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB 0.24 QEN71_RS04425 CreA family protein low > 153
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS08080 tRNA pseudouridine synthase B 0.25 BPHYT_RS14555 CreA family protein low > 109
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB 0.24 ABZR87_RS12270 CreA family protein low > 80
Variovorax sp. OAS795 0.37 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB 0.20 ABID97_RS12385 CreA family protein low > 91
Variovorax sp. SCN45 0.36 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.23 GFF802 Conserved uncharacterized protein CreA low > 127
Magnetospirillum magneticum AMB-1 0.29 AMB_RS20810 tRNA pseudouridine(55) synthase TruB 0.23 AMB_RS22685 hypothetical protein low > 64
Sinorhizobium meliloti 1021 0.28 SMc00321 tRNA pseudouridine synthase B 0.32 SMc01465 CREA protein low > 103
Rhizobium sp. OAE497 0.28 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB 0.29 ABIE40_RS11755 CreA family protein low > 107

Not shown: 60 genomes with orthologs for CSW01_03400 only; 3 genomes with orthologs for CSW01_18165 only