Conservation of cofitness between CSW01_11740 and CSW01_10145 in Vibrio cholerae E7946 ATCC 55056

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_11740 cysteine desulfurase CsdA 1.0 CSW01_10145 ribonuclease E 0.68 8
Dickeya dadantii 3937 0.54 DDA3937_RS05040 cysteine desulfurase CsdA 0.43 DDA3937_RS13160 ribonuclease E low > 74
Dickeya dianthicola 67-19 0.53 HGI48_RS05045 cysteine desulfurase CsdA 0.43 HGI48_RS13225 ribonuclease E — —
Dickeya dianthicola ME23 0.53 DZA65_RS05385 cysteine desulfurase CsdA 0.42 DZA65_RS13700 ribonuclease E low > 75
Pectobacterium carotovorum WPP14 0.52 HER17_RS16425 cysteine desulfurase CsdA 0.44 HER17_RS08610 ribonuclease E low > 75
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_24935 cysteine sulfinate desulfinase 0.35 AO353_01410 ribonuclease E low > 101
Serratia liquefaciens MT49 0.48 IAI46_20350 cysteine desulfurase CsdA 0.44 IAI46_09750 ribonuclease E — —
Escherichia coli BW25113 0.48 b2810 csdA cysteine sulfinate desulfinase (NCBI) 0.43 b1084 rne fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) low > 76
Escherichia coli BL21 0.48 ECD_02661 cysteine sulfinate desulfinase 0.43 ECD_01080 endoribonuclease; RNA-binding protein low > 61
Escherichia coli ECOR38 0.48 HEPCGN_19360 csdA cysteine desulfurase CsdA 0.43 HEPCGN_23860 rne ribonuclease E low > 88
Escherichia coli ECRC62 0.48 BNILDI_10490 csdA cysteine desulfurase CsdA 0.43 BNILDI_19310 rne ribonuclease E low > 75
Escherichia coli ECRC100 0.48 OKFHMN_20105 csdA cysteine desulfurase CsdA 0.43 OKFHMN_03620 rne ribonuclease E 0.64 28
Escherichia coli ECRC101 0.48 MCAODC_10630 csdA cysteine desulfurase CsdA 0.43 MCAODC_22980 rne ribonuclease E low > 88
Escherichia coli ECRC98 0.48 JDDGAC_23770 csdA cysteine desulfurase CsdA 0.43 JDDGAC_07280 rne ribonuclease E low > 87
Escherichia coli ECRC99 0.48 KEDOAH_08025 csdA cysteine desulfurase CsdA 0.43 KEDOAH_24135 rne ribonuclease E — —
Escherichia coli ECRC102 0.48 NIAGMN_17875 csdA cysteine desulfurase CsdA 0.43 NIAGMN_24210 rne ribonuclease E low > 80
Escherichia coli Nissle 1917 0.48 ECOLIN_RS15660 cysteine desulfurase CsdA 0.43 ECOLIN_RS06270 ribonuclease E low > 55
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2886 cysteine desulfurase, catalytic subunit CsdA 0.42 EX28DRAFT_1846 ribonuclease, Rne/Rng family — —
Escherichia fergusonii Becca 0.48 EFB2_01107 Cysteine desulfurase CsdA 0.43 EFB2_02890 Ribonuclease E low > 86
Rahnella sp. WP5 0.48 EX31_RS13120 cysteine desulfurase CsdA 0.43 EX31_RS24395 ribonuclease E low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_00921 Cysteine desulfurase CsdA 0.43 OHPLBJKB_02581 Ribonuclease E low > 74
Escherichia coli ECOR27 0.48 NOLOHH_11985 csdA cysteine desulfurase CsdA 0.43 NOLOHH_21150 rne ribonuclease E low > 76
Klebsiella michiganensis M5al 0.48 BWI76_RS22965 cysteine sulfinate desulfinase 0.41 BWI76_RS11040 ribonuclease E low > 92
Pantoea sp. MT58 0.47 IAI47_10860 cysteine desulfurase SufS 0.43 IAI47_12110 ribonuclease E — —
Enterobacter sp. TBS_079 0.47 MPMX20_03673 Cysteine desulfurase CsdA 0.43 MPMX20_01765 Ribonuclease E low > 85
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS09460 cysteine desulfurase 0.31 ABZR86_RS02720 ribonuclease E — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF3562 Cysteine desulfurase (EC 2.8.1.7), SufS subfamily 0.45 GFF3365 Ribonuclease E (EC 3.1.26.12) — —
Erwinia tracheiphila HP pepo 2.2 0.47 IJEDHG_25280 sufS cysteine desulfurase SufS 0.43 IJEDHG_00720 rne ribonuclease E — —
Pantoea agglomerans CFBP13505 P0401 0.47 PagCFBP13505_RS17730 cysteine desulfurase SufS 0.41 PagCFBP13505_RS05225 ribonuclease E — —
Erwinia tracheiphila SCR3 0.47 LU632_RS11075 sufS cysteine desulfurase SufS 0.43 LU632_RS14860 rne ribonuclease E — —
Klebsiella pneumoniae MKP103 0.47 KDGMDA_03530 cysteine desulfurase CsdA 0.43 KDGMDA_18655 ribonuclease E 0.33 11
Shewanella oneidensis MR-1 0.46 SO3789 aminotransferase, class V (NCBI ptt file) 0.43 SO2785 rne ribonuclease E (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.44 Shewana3_0808 cysteine desulfurase (RefSeq) 0.43 Shewana3_2567 RNAse E (RefSeq) low > 73
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS06240 cysteine desulfurase 0.35 PFLU_RS23100 ribonuclease E low > 109
Pseudomonas sp. SVBP6 0.43 COO64_RS19605 aminotransferase class V-fold PLP-dependent enzyme 0.36 COO64_RS05850 rne ribonuclease E low > 93
Pseudomonas fluorescens SBW25 0.43 PFLU_RS06240 cysteine desulfurase 0.35 PFLU_RS23100 ribonuclease E low > 109
Pseudomonas simiae WCS417 0.43 PS417_06175 cysteine sulfinate desulfinase 0.35 PS417_21485 ribonuclease E — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_3076 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA 0.35 Pf1N1B4_461 Ribonuclease E (EC 3.1.26.12) — —
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_3079 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA 0.35 Pf6N2E2_5942 Ribonuclease E (EC 3.1.26.12) — —
Pseudomonas lactucae CFBP13502 0.40 GEMAOFIL_01405 Cysteine desulfurase SufS 0.35 GEMAOFIL_04441 Ribonuclease E low > 93
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_06075 cysteine sulfinate desulfinase 0.35 AO356_20120 ribonuclease E — —
Pseudomonas sp. RS175 0.38 PFR28_00389 Cysteine desulfurase SufS 0.35 PFR28_03019 Ribonuclease E — —
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS21580 cysteine desulfurase 0.32 RR42_RS14160 ribonuclease E — —

Not shown: 48 genomes with orthologs for CSW01_11740 only; 5 genomes with orthologs for CSW01_10145 only