| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_11305 | | copper amine oxidase | 1.0 | CSW01_09945 | | NADPH-dependent 2,4-dienoyl-CoA reductase | 0.51 | 1 |
| Marinobacter adhaerens HP15 | 0.46 | HP15_3548 | | metal-binding protein | 0.56 | HP15_1058 | | 2,4-dienoyl-CoA reductase | low | > 73 |
| Pseudomonas putida KT2440 | 0.45 | PP_2203 | | conserved protein of unknown function | 0.53 | PP_2008 | | 2,4-dienoyl-CoA reductase | low | > 96 |
| Pseudomonas sp. SVBP6 | 0.44 | COO64_RS17395 | | DUF411 domain-containing protein | 0.53 | COO64_RS05540 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 91 |
| Pseudomonas sp. BP01 | 0.44 | JOY50_RS12705 | | DUF411 domain-containing protein | 0.53 | JOY50_RS16515 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 84 |
| Acidovorax sp. GW101-3H11 | 0.41 | Ac3H11_396 | | CopG protein | 0.56 | Ac3H11_340 | | 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | low | > 79 |
| Pseudomonas stutzeri RCH2 | 0.39 | Psest_3496 | | Predicted metal-binding protein | 0.53 | Psest_2554 | | NADH:flavin oxidoreductases, Old Yellow Enzyme family | low | > 67 |
| Pseudomonas sp. DMC3 | 0.39 | GFF3410 | | hypothetical protein | 0.55 | GFF1451 | | 2,4-dienoyl-CoA reductase | low | > 89 |
| Phaeobacter inhibens DSM 17395 | 0.38 | PGA1_c02020 | | Predicted metal-binding protein | 0.54 | PGA1_c29100 | | 2,4-dienoyl-CoA reductase FadH | low | > 62 |
| Pseudomonas fluorescens FW300-N2E3 | 0.38 | AO353_23790 | | metal-binding protein | 0.55 | AO353_20220 | | 2,4-dienoyl-CoA reductase | low | > 101 |
| Magnetospirillum magneticum AMB-1 | 0.38 | AMB_RS06325 | | metal-binding protein | 0.44 | AMB_RS17475 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 64 |
| Pseudomonas fluorescens SBW25 | 0.37 | PFLU_RS16390 | | DUF411 domain-containing protein | 0.53 | PFLU_RS19095 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.37 | PFLU_RS16390 | | DUF411 domain-containing protein | 0.53 | PFLU_RS19095 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.37 | PS417_14460 | | metal-binding protein | 0.53 | PS417_17165 | | 2,4-dienoyl-CoA reductase | — | — |
| Pseudomonas aeruginosa PA14 | 0.37 | IKLFDK_30045 | | metal-binding protein | 0.54 | IKLFDK_29505 | | NADPH-dependent 2 4-dienoyl-CoA reductase | low | > 98 |
| Pseudomonas segetis P6 | 0.37 | ACVTMO_RS00360 | | DUF411 domain-containing protein | 0.53 | ACVTMO_RS15125 | | oxidoreductase | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.37 | PFGADD_04938 | | DUF411 domain-containing protein | 0.54 | PFGADD_05044 | | 2 4-dienoyl-CoA reductase [NADPH] | low | > 99 |
| Pseudomonas lactucae CFBP13502 | 0.37 | GEMAOFIL_03181 | | hypothetical protein | 0.53 | GEMAOFIL_03732 | | 2,4-dienoyl-CoA reductase | low | > 96 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS01975 | | DUF411 domain-containing protein | 0.55 | LRK54_RS18020 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 59 |
| Pseudomonas sp. FW215-L2 | 0.36 | GFF3663 | | hypothetical protein | 0.53 | GFF4583 | | 2,4-dienoyl-CoA reductase [NADPH] | low | > 111 |
| Shewanella sp. ANA-3 | 0.36 | Shewana3_4286 | | hypothetical protein (RefSeq) | 0.60 | Shewana3_1965 | | 2,4-dienoyl-CoA reductase (RefSeq) | low | > 73 |
| Pseudomonas fluorescens FW300-N2C3 | 0.36 | AO356_26045 | | metal-binding protein | 0.54 | AO356_01700 | | 2,4-dienoyl-CoA reductase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_1082 | | CopG protein | 0.54 | Pf6N2E2_2209 | | 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | low | > 103 |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS01750 | | DUF411 domain-containing protein | 0.55 | LRK55_RS17875 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 63 |
| Alteromonas macleodii MIT1002 | 0.35 | MIT1002_00243 | | Protein of unknown function, DUF | 0.61 | MIT1002_03065 | | 2,4-dienoyl-CoA reductase [NADPH] | low | > 70 |
| Pseudomonas fluorescens FW300-N1B4 | 0.35 | Pf1N1B4_4691 | | CopG protein | 0.55 | Pf1N1B4_3955 | | 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | low | > 87 |
| Pseudomonas sp. RS175 | 0.34 | PFR28_02142 | | hypothetical protein | 0.55 | PFR28_01236 | | 2,4-dienoyl-CoA reductase | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.34 | PfGW456L13_2964 | | CopG protein | 0.55 | PfGW456L13_2567 | | 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.34 | Psyr_1499 | | Protein of unknown function DUF | 0.53 | Psyr_1675 | | 2,4-dienoyl-CoA reductase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.34 | Psyr_1499 | | Protein of unknown function DUF | 0.53 | Psyr_1675 | | 2,4-dienoyl-CoA reductase | low | > 86 |
| Klebsiella pneumoniae MRSN742743 | 0.32 | GJGHJB_05225 | | DUF411 domain-containing protein | 0.55 | GJGHJB_00605 | fadH | 2 4-dienoyl-CoA reductase | low | > 83 |
| Klebsiella pneumoniae MKP103 | 0.32 | KDGMDA_00685 | | Exported protein | 0.55 | KDGMDA_05545 | | NADPH-dependent 2 4-dienoyl-CoA reductase | low | > 94 |
Not shown: 6 genomes with orthologs for CSW01_11305 only; 48 genomes with orthologs for CSW01_09945 only