| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_17130 | | Zn-dependent protease | 1.0 | CSW01_09640 | | C4-dicarboxylate ABC transporter permease | 0.43 | 13 |
| Shewanella loihica PV-4 | 0.56 | Shew_2842 | | peptidase M48, Ste24p (RefSeq) | 0.52 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | low | > 60 |
| Shewanella amazonensis SB2B | 0.56 | Sama_2507 | | hypothetical protein (RefSeq) | 0.53 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | low | > 62 |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_0964 | | peptidase M48, Ste24p (RefSeq) | 0.55 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.54 | SO1137 | | conserved hypothetical protein (NCBI ptt file) | 0.56 | SO3136 | dctM | C4-dicarboxylate transport protein (NCBI ptt file) | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_03052 | | TPR repeat-containing protein YfgC precursor | 0.29 | MIT1002_02428 | | Neu5Ac permease | 0.35 | 40 |
| Lysobacter sp. OAE881 | 0.39 | ABIE51_RS00775 | | M48 family metallopeptidase | 0.24 | ABIE51_RS02840 | | TRAP transporter large permease | low | > 62 |
| Rhodospirillum rubrum S1H | 0.34 | Rru_A2450 | | Peptidase M48, Ste24p (NCBI) | 0.44 | Rru_A3676 | | TRAP dicarboxylate transporter, DctM subunit (NCBI) | low | > 58 |
| Variovorax sp. SCN45 | 0.34 | GFF7455 | | Zn-dependent protease with chaperone function PA4632 | 0.33 | GFF6470 | | TRAP-type C4-dicarboxylate transport system, large permease component | — | — |
| Azospirillum brasilense Sp245 | 0.31 | AZOBR_RS23595 | | peptidase M48 Ste24p | 0.46 | AZOBR_RS09595 | | C4-dicarboxylate ABC transporter permease | low | > 97 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.29 | Echvi_2876 | | Peptidase family M48. | 0.25 | Echvi_3627 | | TRAP transporter, DctM subunit | low | > 79 |
| Castellaniella sp019104865 MT123 | 0.28 | ABCV34_RS04295 | | M48 family metallopeptidase | 0.54 | ABCV34_RS05060 | | TRAP transporter large permease | low | > 48 |
| Pseudomonas sp. BP01 | 0.28 | JOY50_RS19455 | | M48 family metallopeptidase | 0.31 | JOY50_RS02045 | | TRAP transporter large permease | low | > 84 |
| Herbaspirillum seropedicae SmR1 | 0.28 | HSERO_RS16520 | | peptidase M48 | 0.45 | HSERO_RS04250 | | C4-dicarboxylate ABC transporter permease | low | > 78 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS04560 | | M48 family metalloprotease | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | low | > 109 |
| Pseudomonas orientalis W4I3 | 0.27 | QF045_RS07485 | | M48 family metalloprotease | 0.32 | QF045_RS19040 | | TRAP transporter large permease | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS04560 | | M48 family metalloprotease | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | low | > 109 |
| Pseudomonas segetis P6 | 0.27 | ACVTMO_RS18385 | | M48 family metallopeptidase | 0.53 | ACVTMO_RS21740 | dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 75 |
| Pseudomonas lactucae CFBP13502 | 0.27 | GEMAOFIL_01106 | | Metalloprotease LoiP | 0.31 | GEMAOFIL_03770 | | C4-dicarboxylate TRAP transporter large permease protein DctM | — | — |
| Pseudomonas putida KT2440 | 0.27 | PP_0759 | | conserved exported protein of unknown function | 0.30 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | low | > 96 |
| Pseudomonas simiae WCS417 | 0.27 | PS417_04515 | | peptidase M48 | 0.50 | PS417_14900 | | C4-dicarboxylate ABC transporter permease | low | > 88 |
| Pseudomonas aeruginosa PA14 | 0.27 | IKLFDK_00345 | | peptidase M48 | 0.54 | IKLFDK_27640 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.27 | DQ20_RS55715 | | M48 family metallopeptidase | 0.54 | DQ20_RS50405 | dctM;inference=COORDINATES | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_3249 | | Zn-dependent protease with chaperone function | 0.31 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 103 |
| Pseudomonas aeruginosa MRSN321 | 0.27 | DY961_RS28980 | | M48 family metallopeptidase | 0.54 | DY961_RS11695 | dctM;inference=COORDINATES | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 100 |
| Pseudomonas fluorescens FW300-N2C3 | 0.26 | AO356_06950 | | peptidase M48 | 0.31 | AO356_23045 | | hypothetical protein | 0.22 | 37 |
| Cellulophaga baltica 18 | 0.26 | M666_RS11370 | | M48 family metallopeptidase | 0.31 | M666_RS19730 | | TRAP transporter large permease subunit | low | > 67 |
| Pseudomonas sp. RS175 | 0.26 | PFR28_03625 | | Metalloprotease LoiP | 0.57 | PFR28_00121 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 88 |
| Pseudomonas sp. DMC3 | 0.26 | GFF4457 | | Metalloprotease LoiP | 0.56 | GFF1144 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.26 | Psest_3228 | | Zn-dependent protease with chaperone function | 0.54 | Psest_4270 | | TRAP transporter, DctM subunit | low | > 67 |
Not shown: 31 genomes with orthologs for CSW01_17130 only; 19 genomes with orthologs for CSW01_09640 only