| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_14595 | | type VI secretion system ATPase TssH | 1.0 | CSW01_07480 | | ribosomal RNA large subunit methyltransferase K/L | 0.53 | 11 |
| Marinobacter adhaerens HP15 | 0.63 | HP15_3467 | | type VI secretion ATPase, ClpV1 family | 0.38 | HP15_1379 | | RNA methylase | low | > 73 |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS07990 | | type VI secretion system ATPase TssH | 0.56 | HGI48_RS12910 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 71 |
| Dickeya dadantii 3937 | 0.59 | DDA3937_RS07060 | | type VI secretion system ATPase TssH | 0.56 | DDA3937_RS12840 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 74 |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS08585 | | type VI secretion system ATPase TssH | 0.56 | DZA65_RS13375 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.58 | HER17_RS04885 | | type VI secretion system ATPase TssH | 0.56 | HER17_RS11990 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 75 |
| Escherichia coli ECRC102 | 0.56 | NIAGMN_07750 | tssH | type VI secretion system ATPase TssH | 0.57 | NIAGMN_03000 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 80 |
| Escherichia coli ECRC99 | 0.56 | KEDOAH_18250 | tssH | type VI secretion system ATPase TssH | 0.57 | KEDOAH_22455 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.56 | OHPLBJKB_03436 | | Protein ClpV1 | 0.57 | OHPLBJKB_02718 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 74 |
| Escherichia coli ECRC101 | 0.56 | MCAODC_00420 | tssH | type VI secretion system ATPase TssH | 0.57 | MCAODC_24670 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 87 |
| Escherichia coli ECRC100 | 0.56 | OKFHMN_09900 | tssH | type VI secretion system ATPase TssH | 0.57 | OKFHMN_05280 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 79 |
| Escherichia coli ECOR27 | 0.56 | NOLOHH_02260 | tssH | type VI secretion system ATPase TssH | 0.57 | NOLOHH_21835 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 76 |
| Escherichia coli ECRC98 | 0.56 | JDDGAC_13500 | tssH | type VI secretion system ATPase TssH | 0.57 | JDDGAC_08890 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 87 |
| Escherichia fergusonii Becca | 0.55 | EFB2_03820 | | Protein ClpV1 | 0.57 | EFB2_03123 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS17705 | tssH | type VI secretion system ATPase TssH | 0.54 | LU632_RS09965 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 73 |
| Erwinia tracheiphila HP pepo 2.2 | 0.52 | IJEDHG_02670 | | Type VI secretion system ATPase TssH | 0.53 | IJEDHG_20480 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 61 |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_2088 | | ClpB protein | 0.41 | Pf1N1B4_3844 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 87 |
| Pseudomonas sp. DMC3 | 0.43 | GFF452 | | Protein ClpV1 | 0.42 | GFF5254 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 89 |
| Pseudomonas fluorescens FW300-N2E3 | 0.43 | AO353_09415 | | ClpV1 family T6SS ATPase | 0.41 | AO353_00775 | | 50S rRNA methyltransferase | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.42 | Pf6N2E2_4303 | | ClpB protein | 0.40 | Pf6N2E2_2346 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 103 |
| Pseudomonas aeruginosa PA14 | 0.42 | IKLFDK_08005 | | ClpA/B-type protease | 0.42 | IKLFDK_15510 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.41 | DQ20_RS54070 | tssH;go_component=type | type VI secretion system ATPase TssH | 0.42 | DQ20_RS33860 | rlmKL;go_function=RNA | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.41 | DY961_RS19975 | tssH;go_component=type | type VI secretion system ATPase TssH | 0.42 | DY961_RS01710 | rlmKL;go_function=RNA | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 100 |
| Pseudomonas segetis P6 | 0.40 | MPMX49_00137 | | Protein ClpV1 | 0.41 | MPMX49_03025 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 75 |
| Pseudomonas sp. S08-1 | 0.40 | OH686_12815 | | type VI secretion ATPase, ClpV1 family | 0.41 | OH686_03110 | | 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_12155 | | ClpV1 family T6SS ATPase | 0.39 | AO356_02605 | | 50S rRNA methyltransferase | low | > 104 |
| Pseudomonas stutzeri RCH2 | 0.40 | Psest_0125 | | type VI secretion ATPase, ClpV1 family | 0.42 | Psest_1949 | | Predicted N6-adenine-specific DNA methylase | low | > 67 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS29660 | | type VI secretion system ATPase TssH | 0.41 | PFLU_RS22545 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS29660 | | type VI secretion system ATPase TssH | 0.41 | PFLU_RS22545 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.39 | Psyr_4958 | | AAA ATPase, central region:Clp, N terminal:Clp, N terminal | 0.42 | Psyr_2108 | | 23S rRNA m(2)G-2445 methyltransferase | low | > 86 |
| Pseudomonas lactucae CFBP13502 | 0.39 | GEMAOFIL_00064 | | Protein ClpV1 | 0.42 | GEMAOFIL_04331 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.39 | Psyr_4958 | | AAA ATPase, central region:Clp, N terminal:Clp, N terminal | 0.42 | Psyr_2108 | | 23S rRNA m(2)G-2445 methyltransferase | low | > 86 |
| Pseudomonas orientalis W4I3 | 0.39 | QF045_RS02335 | | type VI secretion system ATPase TssH | 0.41 | QF045_RS22735 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 93 |
| Pseudomonas simiae WCS417 | 0.38 | PS417_27980 | | ATPase AAA | 0.41 | PS417_20930 | | 50S rRNA methyltransferase | low | > 88 |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_01633 | | Protein ClpV1 | 0.56 | MPMX20_01599 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 85 |
| Erwinia amylovora T8 | 0.38 | OLJFJH_03125 | | type VI secretion system ATPase TssH | 0.55 | OLJFJH_15975 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 58 |
| Pseudomonas putida KT2440 | 0.38 | PP_3095 | | Protein ClpV1 | 0.42 | PP_2096 | | fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase | low | > 96 |
| Pseudomonas sp. BP01 | 0.38 | JOY50_RS19890 | tssH | type VI secretion system ATPase TssH | 0.42 | JOY50_RS22095 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 84 |
| Enterobacter asburiae PDN3 | 0.38 | EX28DRAFT_0248 | | type VI secretion ATPase, ClpV1 family | 0.55 | EX28DRAFT_1995 | | Predicted N6-adenine-specific DNA methylase | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.38 | MPMX26_00960 | | Protein ClpV1 | 0.35 | MPMX26_01097 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 36 |
| Rahnella sp. WP5 | 0.38 | EX31_RS01880 | | type VI secretion system ATPase TssH | 0.55 | EX31_RS18080 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 89 |
| Klebsiella pneumoniae MKP103 | 0.38 | KDGMDA_20380 | | type VI secretion system ATPase TssH | 0.55 | KDGMDA_18160 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 95 |
| Pantoea sp. MT58 | 0.37 | IAI47_17445 | | type VI secretion system ATPase TssH | 0.57 | IAI47_12690 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 76 |
| Escherichia coli Nissle 1917 | 0.37 | ECOLIN_RS15725 | | type VI secretion system ATPase TssH | 0.57 | ECOLIN_RS04980 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 55 |
| Pseudomonas sp. RS175 | 0.37 | PFR28_04464 | | Protein ClpV1 | 0.41 | PFR28_01055 | | Ribosomal RNA large subunit methyltransferase K/L | low | > 88 |
| Pantoea agglomerans CFBP13505 P0401 | 0.36 | PagCFBP13505_RS19825 | | type VI secretion system ATPase TssH | 0.57 | PagCFBP13505_RS04640 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 74 |
| Pseudomonas sp. SVBP6 | 0.36 | COO64_RS00480 | tssH | type VI secretion system ATPase TssH | 0.42 | COO64_RS05295 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.43 | 67 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.34 | GFF4054 | | ClpB protein | 0.56 | GFF3239 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | low | > 78 |
| Serratia liquefaciens MT49 | 0.33 | IAI46_05600 | | type VI secretion system ATPase TssH | 0.56 | IAI46_08820 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | low | > 87 |
Not shown: 17 genomes with orthologs for CSW01_14595 only; 20 genomes with orthologs for CSW01_07480 only