Conservation of cofitness between CSW01_02445 and CSW01_04870 in Vibrio cholerae E7946 ATCC 55056

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02445 hypothetical protein 1.0 CSW01_04870 ribosome silencing factor 0.40 18
Rahnella sp. WP5 0.62 EX31_RS02695 YggT family protein 0.65 EX31_RS23130 ribosome silencing factor low > 89
Pectobacterium carotovorum WPP14 0.61 HER17_RS03800 YggT family protein 0.71 HER17_RS15235 ribosome silencing factor low > 75
Serratia liquefaciens MT49 0.58 IAI46_21420 YggT family protein 0.65 IAI46_05940 ribosome silencing factor — —
Erwinia tracheiphila HP pepo 2.2 0.57 IJEDHG_03455 YGGT family 0.58 IJEDHG_02455 rsfS ribosome silencing factor low > 61
Erwinia tracheiphila SCR3 0.57 LU632_RS05455 YggT family protein 0.59 LU632_RS16365 rsfS ribosome silencing factor low > 73
Pantoea agglomerans CFBP13505 P0401 0.57 PagCFBP13505_RS16105 YggT family protein 0.70 PagCFBP13505_RS03290 ribosome silencing factor low > 74
Pantoea sp. MT58 0.57 IAI47_03590 YggT family protein 0.70 IAI47_14015 ribosome silencing factor low > 76
Alteromonas macleodii MIT1002 0.56 MIT1002_03063 YGGT family protein 0.59 MIT1002_01853 Ribosomal silencing factor RsfS low > 70
Shewanella loihica PV-4 0.55 Shew_1135 protein of unknown function YGGT (RefSeq) 0.57 Shew_2933 iojap-like protein (RefSeq) — —
Dickeya dadantii 3937 0.55 DDA3937_RS17310 YggT family protein 0.69 DDA3937_RS06180 ribosome silencing factor low > 74
Dickeya dianthicola 67-19 0.55 HGI48_RS17355 YggT family protein 0.71 HGI48_RS06225 ribosome silencing factor low > 71
Shewanella oneidensis MR-1 0.55 SO3355 conserved hypothetical protein (NCBI ptt file) 0.62 SO1170 iojap domain protein (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.55 DZA65_RS18445 YggT family protein 0.70 DZA65_RS06570 ribosome silencing factor low > 75
Shewanella amazonensis SB2B 0.54 Sama_2479 protein of unknown function YGGT (RefSeq) 0.58 Sama_2586 iojap domain-containing protein (RefSeq) — —
Klebsiella michiganensis M5al 0.54 BWI76_RS24105 resistance protein 0.65 BWI76_RS08045 ribosome silencing factor RsfS — —
Klebsiella pneumoniae MKP103 0.53 KDGMDA_04620 YGGT family 0.65 KDGMDA_16405 ribosome silencing factor low > 95
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00764 hypothetical protein 0.67 OHPLBJKB_03069 Ribosomal silencing factor RsfS low > 74
Escherichia coli BL21 0.52 ECD_02782 putative inner membrane protein; compensates for loss in K+ uptake 0.67 ECD_00606 ribosomal silencing factor — —
Escherichia coli BW25113 0.52 b2952 yggT predicted inner membrane protein (NCBI) 0.67 b0637 ybeB orf, hypothetical protein (VIMSS) — —
Escherichia coli ECOR38 0.52 HEPCGN_18555 yggT osmotic shock tolerance protein YggT 0.67 HEPCGN_00920 rsfS ribosome silencing factor low > 88
Escherichia fergusonii Becca 0.52 EFB2_00950 hypothetical protein 0.67 EFB2_03455 Ribosomal silencing factor RsfS low > 86
Escherichia coli ECOR27 0.52 NOLOHH_11120 yggT osmotic shock tolerance protein YggT 0.67 NOLOHH_23730 rsfS ribosome silencing factor low > 76
Escherichia coli ECRC102 0.52 NIAGMN_17015 yggT osmotic shock tolerance protein YggT 0.67 NIAGMN_05410 rsfS ribosome silencing factor low > 80
Escherichia coli ECRC98 0.52 JDDGAC_22880 yggT osmotic shock tolerance protein YggT 0.67 JDDGAC_11000 rsfS ribosome silencing factor low > 87
Escherichia coli ECRC100 0.52 OKFHMN_19250 yggT osmotic shock tolerance protein YggT 0.67 OKFHMN_07355 rsfS ribosome silencing factor low > 79
Escherichia coli Nissle 1917 0.52 ECOLIN_RS16420 osmotic shock tolerance protein YggT 0.67 ECOLIN_RS03470 ribosome silencing factor — —
Escherichia coli ECRC99 0.52 KEDOAH_08890 yggT osmotic shock tolerance protein YggT 0.67 KEDOAH_20615 rsfS ribosome silencing factor — —
Escherichia coli ECRC101 0.52 MCAODC_09770 yggT osmotic shock tolerance protein YggT 0.67 MCAODC_26570 rsfS ribosome silencing factor low > 87
Escherichia coli ECRC62 0.52 BNILDI_09700 yggT osmotic shock tolerance protein YggT 0.67 BNILDI_21740 rsfS ribosome silencing factor low > 75
Erwinia amylovora T8 0.52 OLJFJH_08525 YGGT family 0.66 OLJFJH_17215 ribosome silencing factor low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF3055 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.65 GFF4550 Iojap protein low > 78
Shewanella sp. ANA-3 0.51 Shewana3_1192 protein of unknown function YGGT (RefSeq) 0.61 Shewana3_0997 iojap-like protein (RefSeq) — —
Enterobacter sp. TBS_079 0.50 MPMX20_03810 hypothetical protein 0.67 MPMX20_01296 Ribosomal silencing factor RsfS low > 85
Pseudomonas stutzeri RCH2 0.37 Psest_0282 Predicted integral membrane protein 0.47 Psest_0510 iojap-like ribosome-associated protein — —
Pseudomonas sp. S08-1 0.35 OH686_10985 YggT-like protein 0.50 OH686_09330 ribosome silencing factor low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0475 Protein of unknown function YGGT 0.46 Psyr_4367 Iojap-related protein low > 86
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0475 Protein of unknown function YGGT 0.46 Psyr_4367 Iojap-related protein low > 86
Pseudomonas aeruginosa PUPa3 0.34 DQ20_RS37360 YggT family protein 0.52 DQ20_RS48160 rsfS;go_function=ribosome ribosome silencing factor low > 101
Pseudomonas aeruginosa PA14 0.34 IKLFDK_23460 Uncharacterized protein PA0392 0.53 IKLFDK_20655 ribosome silencing factor — —
Pseudomonas aeruginosa MRSN321 0.33 DY961_RS21940 YggT family protein 0.53 DY961_RS12830 rsfS;go_function=ribosome ribosome silencing factor low > 100
Pseudomonas segetis P6 0.32 ACVTMO_RS03010 YggT family protein 0.48 ACVTMO_RS05205 rsfS ribosome silencing factor low > 75
Marinobacter adhaerens HP15 0.31 HP15_286 protein of unknown function YGGT 0.48 HP15_603 Iojap-related protein low > 73
Kangiella aquimarina DSM 16071 0.26 B158DRAFT_0198 Predicted integral membrane protein 0.53 B158DRAFT_0086 iojap-like ribosome-associated protein low > 40
Methylophilus sp. DMC18 0.23 GFF862 hypothetical protein 0.43 GFF826 Ribosomal silencing factor RsfS low > 43
Dechlorosoma suillum PS 0.22 Dsui_0601 putative integral membrane protein 0.40 Dsui_0452 iojap-like ribosome-associated protein — —

Not shown: 38 genomes with orthologs for CSW01_02445 only; 9 genomes with orthologs for CSW01_04870 only