Conservation of cofitness between CSW01_00395 and CSW01_04590 in Vibrio cholerae E7946 ATCC 55056

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00395 ribosomal RNA small subunit methyltransferase J 1.0 CSW01_04590 transcriptional regulator GcvA 0.70 17
Shewanella amazonensis SB2B 0.61 Sama_3564 hypothetical protein (RefSeq) 0.72 Sama_2429 DNA-binding transcriptional activator GcvA (RefSeq) low > 62
Shewanella sp. ANA-3 0.60 Shewana3_4037 hypothetical protein (RefSeq) 0.71 Shewana3_2894 DNA-binding transcriptional activator GcvA (RefSeq) — —
Shewanella loihica PV-4 0.58 Shew_3647 hypothetical protein (RefSeq) 0.71 Shew_2764 DNA-binding transcriptional activator GcvA (RefSeq) — —
Rahnella sp. WP5 0.56 EX31_RS05160 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 EX31_RS13110 transcriptional regulator GcvA low > 89
Serratia liquefaciens MT49 0.56 IAI46_24205 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 IAI46_20340 transcriptional regulator GcvA 0.49 46
Klebsiella pneumoniae MKP103 0.55 KDGMDA_07420 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.63 KDGMDA_03515 Glycine cleavage system transcriptional activator low > 94
Klebsiella pneumoniae MRSN742743 0.55 GJGHJB_00254 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.63 GJGHJB_00939 gcvA Glycine cleavage system transcriptional activator 0.39 30
Escherichia coli BW25113 0.55 b3497 yhiQ predicted SAM-dependent methyltransferase (NCBI) 0.72 b2808 gcvA DNA-binding transcriptional dual regulator (NCBI) 0.31 20
Escherichia coli BL21 0.55 ECD_03346 16S rRNA m(2)G1516 methyltransferase, SAM-dependent 0.72 ECD_02659 glycine cleavage system transcriptional activator; autorepressor low > 61
Escherichia fergusonii Becca 0.55 EFB2_00318 Ribosomal RNA small subunit methyltransferase J 0.72 EFB2_01109 Glycine cleavage system transcriptional activator low > 86
Escherichia coli Nissle 1917 0.55 ECOLIN_RS19980 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 ECOLIN_RS15650 glycine cleavage system transcriptional regulator GcvA low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_00206 Ribosomal RNA small subunit methyltransferase J 0.72 OHPLBJKB_00923 Glycine cleavage system transcriptional activator low > 74
Escherichia coli ECOR38 0.55 HEPCGN_15330 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 HEPCGN_19375 gcvA glycine cleavage system transcriptional regulator GcvA low > 88
Escherichia coli ECRC98 0.55 JDDGAC_20050 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 JDDGAC_23785 gcvA glycine cleavage system transcriptional regulator GcvA low > 87
Escherichia coli ECRC100 0.55 OKFHMN_16420 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 OKFHMN_20120 gcvA glycine cleavage system transcriptional regulator GcvA low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF518 rRNA small subunit methyltransferase J 0.73 GFF4865 Glycine cleavage system transcriptional activator GcvA low > 78
Escherichia coli ECRC99 0.55 KEDOAH_11725 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 KEDOAH_08010 gcvA glycine cleavage system transcriptional regulator GcvA — —
Escherichia coli ECRC102 0.55 NIAGMN_14185 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 NIAGMN_17890 gcvA glycine cleavage system transcriptional regulator GcvA low > 80
Escherichia coli ECRC101 0.55 MCAODC_06935 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 MCAODC_10645 gcvA glycine cleavage system transcriptional regulator GcvA low > 87
Enterobacter asburiae PDN3 0.55 EX28DRAFT_4064 Putative SAM-dependent methyltransferase 0.71 EX28DRAFT_2883 Transcriptional regulator low > 76
Escherichia coli ECOR27 0.55 NOLOHH_08355 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 NOLOHH_12000 gcvA glycine cleavage system transcriptional regulator GcvA low > 75
Escherichia coli ECRC62 0.55 BNILDI_03205 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 BNILDI_10505 gcvA glycine cleavage system transcriptional regulator GcvA low > 75
Dickeya dadantii 3937 0.54 DDA3937_RS21270 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.71 DDA3937_RS05050 transcriptional regulator GcvA low > 74
Erwinia amylovora T8 0.54 OLJFJH_04525 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.72 OLJFJH_09170 Glycine cleavage system transcriptional activator low > 58
Pectobacterium carotovorum WPP14 0.54 HER17_RS21305 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.71 HER17_RS16415 transcriptional regulator GcvA low > 75
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_12595 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.71 IJEDHG_17275 gcvA Glycine cleavage system transcriptional activator low > 61
Erwinia tracheiphila SCR3 0.53 LU632_RS19465 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.71 LU632_RS06255 transcriptional regulator GcvA low > 73
Enterobacter sp. TBS_079 0.53 MPMX20_04396 Ribosomal RNA small subunit methyltransferase J 0.71 MPMX20_03671 Glycine cleavage system transcriptional activator low > 85
Pantoea sp. MT58 0.52 IAI47_01350 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.71 IAI47_04025 transcriptional regulator GcvA low > 76
Pantoea agglomerans CFBP13505 P0401 0.52 PagCFBP13516_RS01340 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.71 PagCFBP13516_RS04295 transcriptional regulator GcvA low > 80
Dickeya dianthicola ME23 0.50 DZA65_RS00030 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.71 DZA65_RS05390 transcriptional regulator GcvA low > 75
Dickeya dianthicola 67-19 0.50 HGI48_RS00040 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.71 HGI48_RS05050 transcriptional regulator GcvA low > 71
Klebsiella michiganensis M5al 0.50 BWI76_RS26605 16S rRNA (guanine(1516)-N(2))-methyltransferase 0.71 BWI76_RS22955 transcriptional regulator GcvA low > 92
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_1325 Protein of unknown function DUF548 0.29 Psyr_5015 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_1325 Protein of unknown function DUF548 0.29 Psyr_5015 transcriptional regulator, LysR family — —
Pseudomonas segetis P6 0.41 ACVTMO_RS08075 class I SAM-dependent methyltransferase 0.29 ACVTMO_RS01970 LysR family transcriptional regulator low > 75
Pseudomonas sp. S08-1 0.41 OH686_06755 16S rRNA (guanine(1516)-N(2))-methyltransferase 0.31 OH686_11695 Transcriptional regulator, LysR family 0.75 16
Pseudomonas protegens RBAN4 0.41 FABNJH_05970 rsmJ Ribosomal RNA small subunit methyltransferase J 0.30 FABNJH_19680 lysR Transcriptional regulator, LysR family — —
Pseudomonas stutzeri RCH2 0.41 Psest_1563 Protein of unknown function (DUF548). 0.30 Psest_2739 Transcriptional regulator low > 67
Pseudomonas aeruginosa PA14 0.40 IKLFDK_18790 Ribosomal RNA small subunit methyltransferase J 0.31 IKLFDK_23190 LysR family transcriptional regulator low > 98
Pseudomonas aeruginosa MRSN321 0.40 PFGADD_01287 rsmJ Ribosomal RNA small subunit methyltransferase J 0.31 PFGADD_00455 Glycine cleavage system transcriptional activator low > 99
Pseudomonas sp. SVBP6 0.40 COO64_RS19535 class I SAM-dependent methyltransferase 0.34 COO64_RS14470 gcvA transcriptional regulator GcvA low > 91
Pseudomonas aeruginosa PUPa3 0.40 NPBIFN_01306 rsmJ Ribosomal RNA small subunit methyltransferase J 0.31 NPBIFN_00459 Glycine cleavage system transcriptional activator low > 101
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_16350 SAM-dependent methyltransferase 0.29 AO353_15505 LysR family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_3060 SAM-dependent methyltransferase (EC 2.1.1.-) 0.30 Pf1N1B4_1817 Glycine cleavage system transcriptional activator — —
Pseudomonas sp. BP01 0.39 JOY50_RS26070 class I SAM-dependent methyltransferase 0.30 JOY50_RS09180 LysR family transcriptional regulator low > 84
Pseudomonas orientalis W4I3 0.39 QF045_RS08950 class I SAM-dependent methyltransferase 0.29 QF045_RS03520 LysR family transcriptional regulator low > 93
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_06145 SAM-dependent methyltransferase 0.31 AO356_15125 LysR family transcriptional regulator low > 104
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4733 SAM-dependent methyltransferase (EC 2.1.1.-) 0.29 PfGW456L13_555 Glycine cleavage system transcriptional activator low > 87
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J 0.30 PFLU_RS25165 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J 0.30 PFLU_RS25165 LysR family transcriptional regulator low > 109
Pseudomonas lactucae CFBP13502 0.38 GEMAOFIL_01390 Ribosomal RNA small subunit methyltransferase J 0.30 GEMAOFIL_02417 Glycine cleavage system transcriptional activator 0.67 11
Pseudomonas sp. DMC3 0.38 GFF2031 Ribosomal RNA small subunit methyltransferase J 0.29 GFF687 Glycine cleavage system transcriptional activator low > 89
Pseudomonas simiae WCS417 0.38 PS417_06100 SAM-dependent methyltransferase 0.30 PS417_23350 LysR family transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_3094 SAM-dependent methyltransferase (EC 2.1.1.-) 0.37 Pf6N2E2_1560 Glycine cleavage system transcriptional activator GcvA low > 103
Alteromonas macleodii MIT1002 0.38 MIT1002_00112 Ribosomal RNA small subunit methyltransferase J 0.65 MIT1002_01520 Gcv operon activator low > 70
Pseudomonas sp. RS175 0.37 PFR28_00376 Ribosomal RNA small subunit methyltransferase J 0.31 PFR28_04727 Glycine cleavage system transcriptional activator low > 88
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0446 Adenine-specific DNA methylase 0.53 B158DRAFT_0909 Transcriptional regulator low > 40

Not shown: 1 genomes with orthologs for CSW01_00395 only; 39 genomes with orthologs for CSW01_04590 only