Conservation of cofitness between CSW01_07850 and CSW01_03470 in Vibrio cholerae E7946 ATCC 55056

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07850 efflux RND transporter periplasmic adaptor subunit 1.0 CSW01_03470 peptide chain release factor 3 0.61 12
Parabacteroides merdae CL09T00C40 0.23 HMPREF1078_RS10960 efflux RND transporter periplasmic adaptor subunit 0.49 HMPREF1078_RS04145 peptide chain release factor 3 low > 61
Phocaeicola dorei CL03T12C01 0.21 ABI39_RS01065 efflux RND transporter periplasmic adaptor subunit 0.47 ABI39_RS00385 peptide chain release factor 3 — —
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS00165 efflux RND transporter periplasmic adaptor subunit 0.47 HMPREF1058_RS07935 peptide chain release factor 3 — —
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS03590 efflux RND transporter periplasmic adaptor subunit 0.46 HMPREF1181_RS05585 peptide chain release factor 3 low > 56
Bacteroides thetaiotaomicron VPI-5482 0.20 BT2497 membrane fusion efflux protein (NCBI ptt file) 0.46 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) low > 81
Cellulophaga baltica 18 0.19 M666_RS07800 efflux RND transporter periplasmic adaptor subunit 0.47 M666_RS09230 peptide chain release factor 3 low > 67
Bacteroides ovatus ATCC 8483 0.19 BACOVA_01587 efflux transporter, RND family, MFP subunit 0.47 BACOVA_04458 peptide chain release factor 3 low > 96
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_2835 RND family efflux transporter, MFP subunit 0.49 Echvi_0584 peptide chain release factor 3 low > 79
Pseudomonas sp. RS175 0.13 PFR28_02868 Macrolide export protein MacA 0.69 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas fluorescens FW300-N2C3 0.12 AO356_21170 hemolysin secretion protein D 0.69 AO356_07285 peptide chain release factor 3 — —
Pseudomonas sp. DMC3 0.12 GFF758 Macrolide export protein MacA 0.69 GFF5016 Peptide chain release factor RF3 low > 89
Pseudomonas fluorescens FW300-N2E2 0.12 Pf6N2E2_20 pyoverdine-specific efflux macA-like protein 0.69 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas orientalis W4I3 0.12 QF045_RS19145 efflux RND transporter periplasmic adaptor subunit 0.69 QF045_RS07015 peptide chain release factor 3 low > 93
Xanthobacter sp. DMC5 0.12 GFF2164 Macrolide export protein MacA 0.47 GFF1633 Peptide chain release factor 3 — —
Pseudomonas sp. BP01 0.12 JOY50_RS18965 efflux RND transporter periplasmic adaptor subunit 0.69 JOY50_RS22670 peptide chain release factor 3 low > 84
Pseudomonas syringae pv. syringae B728a 0.12 Psyr_1970 Secretion protein HlyD 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.12 Psyr_1970 Secretion protein HlyD 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas simiae WCS417 0.11 PS417_17635 hemolysin secretion protein D 0.69 PS417_04030 peptide chain release factor 3 — —
Pseudomonas fluorescens SBW25 0.11 PFLU_RS19425 efflux RND transporter periplasmic adaptor subunit 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.11 PFLU_RS19425 efflux RND transporter periplasmic adaptor subunit 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Azospirillum sp. SherDot2 0.11 MPMX19_03089 Macrolide export protein MacA 0.53 MPMX19_01192 Peptide chain release factor 3 — —
Herbaspirillum seropedicae SmR1 0.11 HSERO_RS17260 membrane protein 0.62 HSERO_RS14640 peptide chain release factor 3 low > 78
Klebsiella michiganensis M5al 0.11 BWI76_RS22535 membrane fusion protein of a type I secretion system 0.87 BWI76_RS04100 peptide chain release factor 3 low > 92
Pseudomonas aeruginosa PUPa3 0.11 DQ20_RS59580 pvdR;inference=COORDINATES pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR 0.69 DQ20_RS48655 peptide chain release factor 3 low > 101
Pseudomonas aeruginosa PA14 0.11 IKLFDK_11710 pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR 0.69 IKLFDK_20120 peptide chain release factor 3 low > 98
Variovorax sp. SCN45 0.11 GFF1292 Macrolide-specific efflux protein MacA 0.51 GFF2045 Peptide chain release factor 3 low > 127
Pseudomonas aeruginosa MRSN321 0.11 DY961_RS18345 pvdR;inference=COORDINATES pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR 0.69 DY961_RS13355 peptide chain release factor 3 low > 100
Pseudomonas fluorescens GW456-L13 0.11 PfGW456L13_2393 pyoverdine-specific efflux macA-like protein 0.69 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Pseudomonas sp. SVBP6 0.11 COO64_RS18800 efflux RND transporter periplasmic adaptor subunit 0.69 COO64_RS04060 peptide chain release factor 3 low > 93
Shewanella sp. ANA-3 0.10 Shewana3_3456 RND family efflux transporter MFP subunit (RefSeq) 0.81 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Serratia liquefaciens MT49 0.10 IAI46_18480 efflux RND transporter periplasmic adaptor subunit 0.86 IAI46_02875 peptide chain release factor 3 low > 87
Alteromonas macleodii MIT1002 0.10 MIT1002_00481 Macrolide-specific efflux protein MacA precursor 0.82 MIT1002_01192 Peptide chain release factor 3 low > 70
Azospirillum brasilense Sp245 0.10 AZOBR_RS27335 hemolysin secretion protein D 0.54 AZOBR_RS14730 peptide chain release factor 3 — —
Sinorhizobium meliloti 1021 0.10 SMc04350 multidrug efflux system transmembrane protein 0.49 SMc00427 peptide chain release factor RF-3 protein low > 103
Pseudomonas putida KT2440 0.10 PP_4209 ABC export system, membrane fusion protein 0.69 PP_0872 Peptide chain release factor 3 low > 96
Rhodopseudomonas palustris CGA009 0.09 TX73_008470 efflux RND transporter periplasmic adaptor subunit 0.49 TX73_011820 peptide chain release factor 3 low > 86

Not shown: 3 genomes with orthologs for CSW01_07850 only; 77 genomes with orthologs for CSW01_03470 only