| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_13225 | | phosphoribulokinase | 1.0 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.79 | 6 |
| Erwinia tracheiphila SCR3 | 0.76 | LU632_RS22790 | | phosphoribulokinase | 0.86 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.76 | IJEDHG_12125 | | phosphoribulokinase | 0.86 | IJEDHG_15060 | dksA | RNA polymerase-binding protein DksA | — | — |
| Klebsiella michiganensis M5al | 0.76 | BWI76_RS25975 | | phosphoribulokinase | 0.84 | BWI76_RS05015 | | transcriptional regulator | 0.30 | 12 |
| Serratia liquefaciens MT49 | 0.76 | IAI46_23570 | | phosphoribulokinase | 0.86 | IAI46_21210 | | RNA polymerase-binding protein DksA | low | > 87 |
| Escherichia coli ECOR27 | 0.76 | NOLOHH_09050 | prkB | phosphoribulokinase | 0.86 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | low | > 76 |
| Escherichia coli Nissle 1917 | 0.76 | ECOLIN_RS19215 | | phosphoribulokinase | 0.86 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | — | — |
| Rahnella sp. WP5 | 0.75 | EX31_RS04610 | | phosphoribulokinase | 0.86 | EX31_RS03250 | | RNA polymerase-binding protein DksA | low | > 89 |
| Klebsiella pneumoniae MKP103 | 0.75 | KDGMDA_06810 | | phosphoribulokinase | 0.86 | KDGMDA_13270 | | RNA polymerase-binding protein DksA | low | > 95 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.75 | OHPLBJKB_00347 | | Phosphoribulokinase, plasmid | 0.86 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | low | > 74 |
| Escherichia coli BL21 | 0.75 | ECD_03206 | | putative phosphoribulokinase | 0.86 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | — | — |
| Escherichia coli ECOR38 | 0.75 | HEPCGN_16075 | prkB | phosphoribulokinase | 0.86 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | low | > 88 |
| Escherichia fergusonii Becca | 0.75 | EFB2_00467 | | Phosphoribulokinase, plasmid | 0.86 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.75 | GFF3714 | | Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown | 0.86 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | low | > 78 |
| Escherichia coli ECRC62 | 0.75 | BNILDI_02470 | prkB | phosphoribulokinase | 0.86 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | low | > 75 |
| Escherichia coli BW25113 | 0.75 | b3355 | prkB | predicted phosphoribulokinase (NCBI) | 0.86 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.75 | NIAGMN_15020 | prkB | phosphoribulokinase | 0.86 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | low | > 80 |
| Escherichia coli ECRC100 | 0.75 | OKFHMN_17250 | prkB | phosphoribulokinase | 0.86 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.76 | 76 |
| Escherichia coli ECRC101 | 0.75 | MCAODC_07780 | prkB | phosphoribulokinase | 0.86 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | low | > 87 |
| Escherichia coli ECRC99 | 0.75 | KEDOAH_10890 | prkB | phosphoribulokinase | 0.86 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC98 | 0.75 | JDDGAC_20880 | prkB | phosphoribulokinase | 0.86 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | low | > 87 |
| Pantoea sp. MT58 | 0.75 | IAI47_01975 | | phosphoribulokinase | 0.85 | IAI47_15635 | | RNA polymerase-binding protein DksA | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.75 | PagCFBP13505_RS21605 | | phosphoribulokinase | 0.85 | PagCFBP13505_RS13365 | | RNA polymerase-binding protein DksA | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.74 | HER17_RS01925 | | phosphoribulokinase | 0.83 | HER17_RS05580 | | RNA polymerase-binding protein DksA | low | > 75 |
| Enterobacter sp. TBS_079 | 0.74 | MPMX20_04258 | | Phosphoribulokinase, plasmid | 0.86 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.35 | 46 |
| Dickeya dianthicola 67-19 | 0.74 | HGI48_RS19555 | | phosphoribulokinase | 0.85 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | low | > 71 |
| Dickeya dadantii 3937 | 0.74 | DDA3937_RS19435 | | phosphoribulokinase | 0.86 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | — | — |
| Dickeya dianthicola ME23 | 0.74 | DZA65_RS20640 | | phosphoribulokinase | 0.85 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | — | — |
| Enterobacter asburiae PDN3 | 0.74 | EX28DRAFT_4174 | | Phosphoribulokinase | 0.86 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | — | — |
| Erwinia amylovora T8 | 0.74 | OLJFJH_04010 | | phosphoribulokinase | 0.86 | OLJFJH_00765 | | RNA polymerase-binding protein DksA | — | — |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_3400 | | phosphoribulokinase/uridine kinase (RefSeq) | 0.82 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_03965 | | Phosphoribulokinase, plasmid | 0.70 | MIT1002_03690 | | DnaK suppressor protein | low | > 70 |
| Shewanella oneidensis MR-1 | 0.70 | SO0878 | prkB | phosphoribulokinase (NCBI ptt file) | 0.83 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | — | — |
| Shewanella loihica PV-4 | 0.70 | Shew_0587 | | phosphoribulokinase (RefSeq) | 0.83 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.68 | Sama_3002 | | phosphoribulokinase (RefSeq) | 0.82 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 62 |
| Dechlorosoma suillum PS | 0.57 | Dsui_1562 | | phosphoribulokinase | 0.56 | Dsui_2717 | | RNA polymerase-binding protein DksA | low | > 51 |
| Rhodospirillum rubrum S1H | 0.56 | Rru_A2404 | | Phosphoribulokinase (NCBI) | 0.28 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | low | > 58 |
| Rhodopseudomonas palustris CGA009 | 0.56 | TX73_024115 | | phosphoribulokinase | 0.30 | TX73_020255 | | RNA polymerase-binding protein DksA | — | — |
| Xanthobacter sp. DMC5 | 0.54 | GFF2444 | | Phosphoribulokinase, chromosomal | 0.33 | GFF1254 | | RNA polymerase-binding transcription factor DksA | — | — |
| Marinobacter adhaerens HP15 | 0.54 | HP15_3311 | | phosphoribulokinase | 0.63 | HP15_332 | | transcriptional regulator, TraR/DksA family | — | — |
| Sinorhizobium meliloti 1021 | 0.52 | SM_b20201 | | phosphoribulokinase | 0.35 | SMc00469 | | DnaK suppressor protein | — | — |
Not shown: 7 genomes with orthologs for CSW01_13225 only; 35 genomes with orthologs for CSW01_03155 only