Conservation of cofitness between CSW01_00395 and CSW01_02210 in Vibrio cholerae E7946 ATCC 55056

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00395 ribosomal RNA small subunit methyltransferase J 1.0 CSW01_02210 DUF3971 domain-containing protein 0.74 2
Shewanella sp. ANA-3 0.60 Shewana3_4037 hypothetical protein (RefSeq) 0.19 Shewana3_3643 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.58 Shew_3647 hypothetical protein (RefSeq) 0.18 Shew_0408 hypothetical protein (RefSeq) low > 60
Rahnella sp. WP5 0.56 EX31_RS05160 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.21 EX31_RS12260 AsmA2 domain-containing protein low > 89
Serratia liquefaciens MT49 0.56 IAI46_24205 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.21 IAI46_22695 AsmA2 domain-containing protein YhdP low > 86
Klebsiella pneumoniae MKP103 0.55 KDGMDA_07420 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.19 KDGMDA_06250 AsmA2 domain-containing protein low > 95
Escherichia coli BL21 0.55 ECD_03346 16S rRNA m(2)G1516 methyltransferase, SAM-dependent 0.17 ECD_03105 DUF3971-AsmA2 domains protein low > 61
Escherichia coli BW25113 0.55 b3497 yhiQ predicted SAM-dependent methyltransferase (NCBI) 0.18 b4472 yhdP conserved membrane protein, predicted transporter (NCBI) low > 76
Escherichia fergusonii Becca 0.55 EFB2_00318 Ribosomal RNA small subunit methyltransferase J 0.18 EFB2_00585 hypothetical protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_00206 Ribosomal RNA small subunit methyltransferase J 0.18 OHPLBJKB_00459 hypothetical protein low > 74
Escherichia coli Nissle 1917 0.55 ECOLIN_RS19980 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.18 ECOLIN_RS18600 AsmA2 domain-containing protein YhdP 0.43 25
Escherichia coli ECRC98 0.55 JDDGAC_20050 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.17 JDDGAC_21375 yhdP AsmA2 domain-containing protein YhdP 0.25 36
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF518 rRNA small subunit methyltransferase J 0.19 GFF2139 FIG005080: Possible exported protein low > 78
Escherichia coli ECRC101 0.55 MCAODC_06935 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.17 MCAODC_08270 yhdP AsmA2 domain-containing protein YhdP low > 88
Escherichia coli ECRC99 0.55 KEDOAH_11725 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.17 KEDOAH_10400 yhdP AsmA2 domain-containing protein YhdP — —
Escherichia coli ECOR38 0.55 HEPCGN_15330 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.18 HEPCGN_16615 yhdP AsmA2 domain-containing protein YhdP low > 88
Escherichia coli ECRC100 0.55 OKFHMN_16420 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.17 OKFHMN_17750 yhdP AsmA2 domain-containing protein YhdP low > 79
Escherichia coli ECRC102 0.55 NIAGMN_14185 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.17 NIAGMN_15510 yhdP AsmA2 domain-containing protein YhdP 0.71 39
Enterobacter asburiae PDN3 0.55 EX28DRAFT_4064 Putative SAM-dependent methyltransferase 0.19 EX28DRAFT_3296 TIGR02099 family protein low > 76
Escherichia coli ECOR27 0.55 NOLOHH_08355 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.18 NOLOHH_09535 yhdP AsmA2 domain-containing protein YhdP low > 76
Escherichia coli ECRC62 0.55 BNILDI_03205 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.18 BNILDI_01985 yhdP AsmA2 domain-containing protein YhdP low > 75
Dickeya dadantii 3937 0.54 DDA3937_RS21270 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.20 DDA3937_RS01455 AsmA2 domain-containing protein YhdP low > 74
Erwinia amylovora T8 0.54 OLJFJH_04525 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.19 OLJFJH_06935 DUF3971 domain-containing protein low > 58
Pectobacterium carotovorum WPP14 0.54 HER17_RS21305 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.21 HER17_RS20145 AsmA2 domain-containing protein YhdP low > 75
Erwinia tracheiphila SCR3 0.53 LU632_RS19465 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.20 LU632_RS21425 yhdP AsmA2 domain-containing protein YhdP low > 74
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_12595 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.20 IJEDHG_13585 Protein of unknown function low > 61
Enterobacter sp. TBS_079 0.53 MPMX20_04396 Ribosomal RNA small subunit methyltransferase J 0.19 MPMX20_04152 hypothetical protein low > 85
Pantoea agglomerans CFBP13505 P0401 0.52 PagCFBP13505_RS17850 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.21 PagCFBP13505_RS11055 AsmA2 domain-containing protein low > 74
Pantoea sp. MT58 0.52 IAI47_01350 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.21 IAI47_02460 AsmA2 domain-containing protein YhdP low > 76
Dickeya dianthicola 67-19 0.50 HGI48_RS00040 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.20 HGI48_RS01375 AsmA2 domain-containing protein YhdP low > 71
Klebsiella michiganensis M5al 0.50 BWI76_RS26605 16S rRNA (guanine(1516)-N(2))-methyltransferase 0.19 BWI76_RS25475 TIGR02099 family protein low > 92
Dickeya dianthicola ME23 0.50 DZA65_RS00030 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.20 DZA65_RS01435 AsmA2 domain-containing protein low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_1325 Protein of unknown function DUF548 0.08 Psyr_4158 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_1325 Protein of unknown function DUF548 0.08 Psyr_4158 conserved hypothetical protein — —
Pseudomonas segetis P6 0.41 MPMX49_01631 Ribosomal RNA small subunit methyltransferase J 0.07 MPMX49_03867 hypothetical protein low > 75
Pseudomonas stutzeri RCH2 0.41 Psest_1563 Protein of unknown function (DUF548). 0.08 Psest_3322 TIGR02099 family protein low > 67
Pseudomonas sp. S08-1 0.41 OH686_06755 16S rRNA (guanine(1516)-N(2))-methyltransferase 0.07 OH686_08590 Possible exported protein — —
Pseudomonas aeruginosa PA14 0.40 IKLFDK_18790 Ribosomal RNA small subunit methyltransferase J 0.08 IKLFDK_01700 TIGR02099 family protein low > 100
Pseudomonas sp. SVBP6 0.40 COO64_RS19535 class I SAM-dependent methyltransferase 0.09 COO64_RS04215 YhdP family protein low > 93
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_3060 SAM-dependent methyltransferase (EC 2.1.1.-) 0.08 Pf1N1B4_1094 FIG005080: Possible exported protein — —
Pseudomonas sp. BP01 0.39 JOY50_RS26070 class I SAM-dependent methyltransferase 0.07 JOY50_RS11060 YhdP family protein low > 84
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4733 SAM-dependent methyltransferase (EC 2.1.1.-) 0.07 PfGW456L13_5028 FIG005080: Possible exported protein low > 87
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_06145 SAM-dependent methyltransferase 0.07 AO356_07105 hypothetical protein low > 104
Pseudomonas sp. DMC3 0.38 GFF2031 Ribosomal RNA small subunit methyltransferase J 0.08 GFF1814 hypothetical protein low > 89
Pseudomonas simiae WCS417 0.38 PS417_06100 SAM-dependent methyltransferase 0.08 PS417_04275 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_3094 SAM-dependent methyltransferase (EC 2.1.1.-) 0.07 Pf6N2E2_3282 FIG005080: Possible exported protein low > 103
Alteromonas macleodii MIT1002 0.38 MIT1002_00112 Ribosomal RNA small subunit methyltransferase J 0.15 MIT1002_00225 putative protein involved in outer membrane biogenesis low > 70
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0446 Adenine-specific DNA methylase 0.08 B158DRAFT_2070 TIGR02099 family protein low > 40

Not shown: 7 genomes with orthologs for CSW01_00395 only; 8 genomes with orthologs for CSW01_02210 only