Conservation of cofitness between CSW01_10145 and CSW01_01485 in Vibrio cholerae E7946 ATCC 55056

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10145 ribonuclease E 1.0 CSW01_01485 transcriptional regulator 0.68 10
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF3365 Ribonuclease E (EC 3.1.26.12) 0.49 GFF570 Gluconate utilization system Gnt-I transcriptional repressor — —
Pectobacterium carotovorum WPP14 0.44 HER17_RS08610 ribonuclease E 0.52 HER17_RS01450 gluconate operon transcriptional repressor GntR low > 75
Serratia liquefaciens MT49 0.44 IAI46_09750 ribonuclease E 0.54 IAI46_23965 gluconate operon transcriptional repressor GntR — —
Enterobacter sp. TBS_079 0.43 MPMX20_01765 Ribonuclease E 0.52 MPMX20_04319 HTH-type transcriptional regulator GntR low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_02581 Ribonuclease E 0.52 OHPLBJKB_00264 HTH-type transcriptional regulator GntR low > 74
Rahnella sp. WP5 0.43 EX31_RS24395 ribonuclease E 0.54 EX31_RS05060 gluconate operon transcriptional repressor GntR low > 89
Dickeya dianthicola 67-19 0.43 HGI48_RS13225 ribonuclease E 0.55 HGI48_RS19900 gluconate operon transcriptional repressor GntR — —
Erwinia tracheiphila HP pepo 2.2 0.43 IJEDHG_00720 rne ribonuclease E 0.54 IJEDHG_08040 gntR gluconate operon transcriptional repressor GntR low > 61
Escherichia coli Nissle 1917 0.43 ECOLIN_RS06270 ribonuclease E 0.52 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR low > 55
Escherichia fergusonii Becca 0.43 EFB2_02890 Ribonuclease E 0.52 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Erwinia tracheiphila SCR3 0.43 LU632_RS14860 rne ribonuclease E 0.53 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR low > 73
Escherichia coli ECRC62 0.43 BNILDI_19310 rne ribonuclease E 0.52 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR low > 75
Dickeya dadantii 3937 0.43 DDA3937_RS13160 ribonuclease E 0.55 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Klebsiella pneumoniae MKP103 0.43 KDGMDA_18655 ribonuclease E 0.51 KDGMDA_07120 gluconate operon transcriptional repressor GntR low > 95
Escherichia coli BL21 0.43 ECD_01080 endoribonuclease; RNA-binding protein 0.51 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor low > 61
Escherichia coli ECOR38 0.43 HEPCGN_23860 rne ribonuclease E 0.52 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR low > 88
Escherichia coli BW25113 0.43 b1084 rne fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) 0.52 b3438 gntR DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli ECOR27 0.43 NOLOHH_21150 rne ribonuclease E 0.51 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 76
Pantoea sp. MT58 0.43 IAI47_12110 ribonuclease E 0.52 IAI47_01650 gluconate operon transcriptional repressor GntR low > 76
Escherichia coli ECRC101 0.43 MCAODC_22980 rne ribonuclease E 0.52 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC98 0.43 JDDGAC_07280 rne ribonuclease E 0.52 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC102 0.43 NIAGMN_24210 rne ribonuclease E 0.52 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR low > 80
Escherichia coli ECRC100 0.43 OKFHMN_03620 rne ribonuclease E 0.52 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR low > 79
Escherichia coli ECRC99 0.43 KEDOAH_24135 rne ribonuclease E 0.52 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Dickeya dianthicola ME23 0.42 DZA65_RS13700 ribonuclease E 0.55 DZA65_RS20970 gluconate operon transcriptional repressor GntR low > 75
Enterobacter asburiae PDN3 0.42 EX28DRAFT_1846 ribonuclease, Rne/Rng family 0.51 EX28DRAFT_4274 transcriptional regulator, LacI family — —
Pantoea agglomerans CFBP13505 P0401 0.41 PagCFBP13505_RS05225 ribonuclease E 0.50 PagCFBP13505_RS18155 gluconate operon transcriptional repressor GntR low > 74
Klebsiella michiganensis M5al 0.41 BWI76_RS11040 ribonuclease E 0.51 BWI76_RS26245 transcriptional regulator low > 92
Pseudomonas sp. SVBP6 0.36 COO64_RS05850 rne ribonuclease E 0.34 COO64_RS25590 LacI family DNA-binding transcriptional regulator low > 93
Pseudomonas sp. RS175 0.35 PFR28_03019 Ribonuclease E 0.34 PFR28_00593 HTH-type transcriptional regulator GntR — —
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_01410 ribonuclease E 0.33 AO353_03255 LacI family transcriptional regulator low > 101
Pseudomonas lactucae CFBP13502 0.35 GEMAOFIL_04441 Ribonuclease E 0.34 GEMAOFIL_04536 HTH-type transcriptional regulator GntR low > 96
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS23100 ribonuclease E 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS23100 ribonuclease E 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_461 Ribonuclease E (EC 3.1.26.12) 0.35 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor — —
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_20120 ribonuclease E 0.34 AO356_05065 LacI family transcriptional regulator — —
Pseudomonas simiae WCS417 0.35 PS417_21485 ribonuclease E 0.33 PS417_21990 LacI family transcriptional regulator — —
Pseudomonas orientalis W4I3 0.35 QF045_RS23565 ribonuclease E 0.34 QF045_RS24095 LacI family DNA-binding transcriptional regulator low > 93
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_5942 Ribonuclease E (EC 3.1.26.12) 0.34 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS14370 ribonuclease E/G 0.24 RALBFv3_RS16125 GntR family transcriptional regulator — —
Ralstonia solanacearum UW163 0.33 UW163_RS11835 ribonuclease E/G 0.24 UW163_RS16860 GntR family transcriptional regulator — —
Ralstonia solanacearum GMI1000 0.33 RS_RS05150 ribonuclease E 0.26 RS_RS24865 LacI family DNA-binding transcriptional regulator — —
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS14160 ribonuclease E 0.26 RR42_RS22645 GntR family transcriptional regulator — —
Ralstonia solanacearum PSI07 0.32 RPSI07_RS19090 ribonuclease E/G 0.26 RPSI07_RS07575 LacI family DNA-binding transcriptional regulator — —
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_04339 RNAse E (EC 3.1.26.12) 0.30 H281DRAFT_05920 transcriptional regulator, LacI family — —

Not shown: 3 genomes with orthologs for CSW01_10145 only; 30 genomes with orthologs for CSW01_01485 only