Conservation of cofitness between CSW01_03155 and CSW01_01265 in Vibrio cholerae E7946 ATCC 55056

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03155 RNA polymerase-binding transcription factor DksA 1.0 CSW01_01265 ADP-L-glycero-D-mannoheptose-6-epimerase 0.89 5
Enterobacter asburiae PDN3 0.86 EX28DRAFT_3734 transcriptional regulator, TraR/DksA family 0.72 EX28DRAFT_3871 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Enterobacter sp. TBS_079 0.86 MPMX20_00831 RNA polymerase-binding transcription factor DksA 0.72 MPMX20_00114 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF87 C4-type zinc finger protein, DksA/TraR family 0.72 GFF392 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) low > 78
Klebsiella pneumoniae MKP103 0.86 KDGMDA_13270 RNA polymerase-binding protein DksA 0.72 KDGMDA_07945 ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli Nissle 1917 0.86 ECOLIN_RS00815 RNA polymerase-binding protein DksA 0.73 ECOLIN_RS20645 ADP-glyceromanno-heptose 6-epimerase — —
Escherichia fergusonii Becca 0.86 EFB2_03899 RNA polymerase-binding transcription factor DksA 0.73 EFB2_00192 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Escherichia coli ECRC102 0.86 NIAGMN_08195 dksA RNA polymerase-binding protein DksA 0.73 NIAGMN_13460 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Erwinia tracheiphila SCR3 0.86 LU632_RS20080 dksA RNA polymerase-binding protein DksA 0.70 LU632_RS21915 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli BW25113 0.86 b0145 dksA DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) 0.73 b3619 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) low > 76
Escherichia coli ECOR38 0.86 HEPCGN_08295 dksA RNA polymerase-binding protein DksA 0.73 HEPCGN_14545 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC62 0.86 BNILDI_08980 dksA RNA polymerase-binding protein DksA 0.73 BNILDI_03930 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC100 0.86 OKFHMN_10345 dksA RNA polymerase-binding protein DksA 0.73 OKFHMN_15700 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC101 0.86 MCAODC_00860 dksA RNA polymerase-binding protein DksA 0.73 MCAODC_06210 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli BL21 0.86 ECD_00144 transcriptional regulator of rRNA transcription; DnaK suppressor protein 0.73 ECD_03476 ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding — —
Erwinia amylovora T8 0.86 OLJFJH_00765 RNA polymerase-binding protein DksA 0.70 OLJFJH_05885 ADP-glyceromanno-heptose 6-epimerase — —
Dickeya dadantii 3937 0.86 DDA3937_RS15935 RNA polymerase-binding protein DksA 0.71 DDA3937_RS20440 ADP-glyceromanno-heptose 6-epimerase — —
Serratia liquefaciens MT49 0.86 IAI46_21210 RNA polymerase-binding protein DksA 0.73 IAI46_24735 ADP-glyceromanno-heptose 6-epimerase — —
Rahnella sp. WP5 0.86 EX31_RS03250 RNA polymerase-binding protein DksA 0.71 EX31_RS14395 ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC99 0.86 KEDOAH_17810 dksA RNA polymerase-binding protein DksA 0.73 KEDOAH_12450 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC98 0.86 JDDGAC_13940 dksA RNA polymerase-binding protein DksA 0.73 JDDGAC_19325 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.86 OHPLBJKB_03517 RNA polymerase-binding transcription factor DksA 0.73 OHPLBJKB_00081 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Erwinia tracheiphila HP pepo 2.2 0.86 IJEDHG_15060 dksA RNA polymerase-binding protein DksA 0.70 IJEDHG_07870 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECOR27 0.86 NOLOHH_02690 dksA RNA polymerase-binding protein DksA 0.73 NOLOHH_07580 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Pantoea sp. MT58 0.85 IAI47_15635 RNA polymerase-binding protein DksA 0.69 IAI47_00690 ADP-glyceromanno-heptose 6-epimerase — —
Dickeya dianthicola 67-19 0.85 HGI48_RS16050 RNA polymerase-binding protein DksA 0.70 HGI48_RS00770 ADP-glyceromanno-heptose 6-epimerase — —
Dickeya dianthicola ME23 0.85 DZA65_RS17135 RNA polymerase-binding protein DksA 0.70 DZA65_RS00825 ADP-glyceromanno-heptose 6-epimerase — —
Pantoea agglomerans CFBP13505 P0401 0.85 PagCFBP13505_RS13365 RNA polymerase-binding protein DksA 0.70 PagCFBP13505_RS18655 ADP-glyceromanno-heptose 6-epimerase — —
Klebsiella michiganensis M5al 0.84 BWI76_RS05015 transcriptional regulator 0.72 BWI76_RS27260 ADP-L-glycero-D-mannoheptose-6-epimerase — —
Pectobacterium carotovorum WPP14 0.83 HER17_RS05580 RNA polymerase-binding protein DksA 0.71 HER17_RS20770 ADP-glyceromanno-heptose 6-epimerase low > 75
Shewanella loihica PV-4 0.83 Shew_3129 TraR/DksA family transcriptional regulator (RefSeq) 0.57 Shew_3694 ADP-L-glycero-D-manno-heptose-6-epimerase (RefSeq) — —
Pseudomonas aeruginosa PUPa3 0.70 DQ20_RS52680 dksA;go_function=enzyme RNA polymerase-binding protein DksA 0.44 DQ20_RS40835 rfaD;go_function=ADP-glyceromanno-heptose ADP-glyceromanno-heptose 6-epimerase low > 101
Pseudomonas aeruginosa MRSN321 0.70 DY961_RS09350 dksA;go_function=enzyme RNA polymerase-binding protein DksA 0.44 DY961_RS00180 rfaD;go_function=ADP-glyceromanno-heptose ADP-glyceromanno-heptose 6-epimerase low > 100
Pseudomonas aeruginosa PA14 0.70 IKLFDK_30000 RNA polymerase-binding protein DksA 0.44 IKLFDK_17110 ADP-glyceromanno-heptose 6-epimerase low > 98
Pseudomonas sp. BP01 0.68 JOY50_RS27695 dksA RNA polymerase-binding protein DksA 0.45 JOY50_RS12210 rfaD ADP-glyceromanno-heptose 6-epimerase low > 84
Pseudomonas sp. SVBP6 0.67 COO64_RS15070 dksA RNA polymerase-binding protein DksA 0.44 COO64_RS00370 rfaD ADP-glyceromanno-heptose 6-epimerase low > 93
Methylophilus sp. DMC18 0.58 GFF2238 RNA polymerase-binding transcription factor DksA 0.33 GFF297 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Dechlorosoma suillum PS 0.56 Dsui_2717 RNA polymerase-binding protein DksA 0.52 Dsui_1953 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS08530 RNA polymerase-binding protein DksA 0.27 A4249_RS05625 ADP-glyceromanno-heptose 6-epimerase low > 48
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_02663 DnaK suppressor protein DksA 0.27 CCNA_01497 ADP-L-glycero-D-manno-heptose-6-epimerase low > 67
Caulobacter crescentus NA1000 0.34 CCNA_02663 DnaK suppressor protein DksA 0.27 CCNA_01497 ADP-L-glycero-D-manno-heptose-6-epimerase low > 66
Xanthobacter sp. DMC5 0.33 GFF1254 RNA polymerase-binding transcription factor DksA 0.30 GFF369 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS05100 RNA polymerase-binding protein DksA 0.49 ABZR87_RS09505 ADP-glyceromanno-heptose 6-epimerase low > 80
Castellaniella sp019104865 MT123 0.31 ABCV34_RS13420 RNA polymerase-binding protein DksA 0.49 ABCV34_RS07065 ADP-glyceromanno-heptose 6-epimerase — —
Rhodopseudomonas palustris CGA009 0.30 TX73_020255 RNA polymerase-binding protein DksA 0.32 TX73_020650 ADP-glyceromanno-heptose 6-epimerase — —
Rhodospirillum rubrum S1H 0.28 Rru_A2847 Transcriptional regulators, TraR/DksA family (NCBI) 0.31 Rru_A3278 ADP-L-glycero-D-manno-heptose-6-epimerase (NCBI) — —

Not shown: 30 genomes with orthologs for CSW01_03155 only; 17 genomes with orthologs for CSW01_01265 only