Conservation of cofitness between CSW01_19400 and CSW01_01175 in Vibrio cholerae E7946 ATCC 55056

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_19400 putrescine-ornithine antiporter 1.0 CSW01_01175 formamidopyrimidine-DNA glycosylase 0.64 3
Shewanella amazonensis SB2B 0.90 Sama_3335 potE putrescine transporter (RefSeq) 0.58 Sama_0117 formamidopyrimidine-DNA glycosylase (RefSeq) low > 62
Shewanella sp. ANA-3 0.86 Shewana3_3872 potE putrescine transporter (RefSeq) 0.57 Shewana3_4084 formamidopyrimidine-DNA glycosylase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.86 SO0313 potE putrescine-ornithine antiporter (NCBI ptt file) 0.60 SO4726 mutM formamidopyrimidine-DNA glycosylase (NCBI ptt file) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF4603 Putrescine/proton symporter, putrescine/ornithine antiporter PotE 0.59 GFF374 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 78
Escherichia coli ECOR38 0.76 HEPCGN_01140 potE putrescine-ornithine antiporter 0.60 HEPCGN_14460 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 88
Escherichia coli Nissle 1917 0.76 ECOLIN_RS03735 putrescine-ornithine antiporter 0.60 ECOLIN_RS20715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 55
Escherichia fergusonii Becca 0.76 EFB2_03405 Putrescine transporter PotE 0.60 EFB2_00178 Formamidopyrimidine-DNA glycosylase low > 86
Escherichia coli BW25113 0.76 b0692 potE putrescine/proton symporter: putrescine/ornithine antiporter (NCBI) 0.60 b3635 mutM formamidopyrimidine-DNA glycosylase (NCBI) low > 76
Escherichia coli ECRC62 0.76 BNILDI_21480 potE putrescine-ornithine antiporter 0.60 BNILDI_04000 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 75
Escherichia coli BL21 0.76 ECD_00648 putrescine/proton symporter: putrescine/ornithine antiporter 0.60 ECD_03492 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase low > 61
Escherichia coli ECOR27 0.76 NOLOHH_23475 potE putrescine-ornithine antiporter 0.60 NOLOHH_07515 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 76
Serratia liquefaciens MT49 0.76 IAI46_02035 putrescine-ornithine antiporter 0.59 IAI46_24810 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 87
Escherichia coli ECRC100 0.76 OKFHMN_07095 potE putrescine-ornithine antiporter 0.60 OKFHMN_15635 Formamidopyrimidine-DNA glycosylase low > 79
Escherichia coli ECRC101 0.76 MCAODC_26310 potE putrescine-ornithine antiporter 0.60 MCAODC_06145 Formamidopyrimidine-DNA glycosylase low > 87
Escherichia coli ECRC99 0.76 KEDOAH_20875 potE putrescine-ornithine antiporter 0.60 KEDOAH_12515 Formamidopyrimidine-DNA glycosylase — —
Escherichia coli ECRC98 0.76 JDDGAC_10745 potE putrescine-ornithine antiporter 0.60 JDDGAC_19260 Formamidopyrimidine-DNA glycosylase low > 87
Escherichia coli ECRC102 0.76 NIAGMN_05150 potE putrescine-ornithine antiporter 0.60 NIAGMN_13395 Formamidopyrimidine-DNA glycosylase low > 80
Enterobacter asburiae PDN3 0.75 EX28DRAFT_2286 putrescine-ornithine antiporter 0.60 EX28DRAFT_3885 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_01335 Putrescine transporter PotE 0.61 MPMX20_00100 Formamidopyrimidine-DNA glycosylase low > 85
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_3775 Putrescine/proton symporter, putrescine/ornithine antiporter PotE 0.54 PfGW456L13_979 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 87
Rhizobium sp. OAE497 0.56 ABIE40_RS23770 putrescine-ornithine antiporter 0.33 ABIE40_RS01590 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 107
Sinorhizobium meliloti 1021 0.55 SMa0678 putrescine transporter 0.32 SMc01154 formamidopyrimidine-DNA glycosylase low > 103
Pseudomonas segetis P6 0.52 MPMX49_03694 Putrescine transporter PotE 0.53 MPMX49_04441 Formamidopyrimidine-DNA glycosylase low > 75
Pseudomonas sp. DMC3 0.51 GFF3610 Putrescine transporter PotE 0.53 GFF239 Formamidopyrimidine-DNA glycosylase low > 89
Pseudomonas sp. S08-1 0.51 OH686_07040 Putrescine/proton symporter, putrescine/ornithine antiporter PotE 0.49 OH686_14125 DNA-formamidopyrimidine glycosylase low > 80
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_4994 Putrescine/proton symporter, putrescine/ornithine antiporter PotE 0.54 Pf1N1B4_2309 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 87
Pseudomonas sp. BP01 0.49 JOY50_RS11970 potE putrescine-ornithine antiporter 0.52 JOY50_RS20760 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 84
Lysobacter sp. OAE881 0.19 ABIE51_RS14640 amino acid permease 0.53 ABIE51_RS00335 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 62
Rhodanobacter denitrificans FW104-10B01 0.18 LRK54_RS04530 amino acid permease 0.53 LRK54_RS10815 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 59
Rhodanobacter denitrificans MT42 0.18 LRK55_RS04305 amino acid permease 0.53 LRK55_RS10505 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 63
Dyella japonica UNC79MFTsu3.2 0.17 ABZR86_RS00365 amino acid permease 0.53 ABZR86_RS13335 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 74
Rhodanobacter sp. FW510-T8 0.17 OKGIIK_11355 Amino acid permease 0.54 OKGIIK_13060 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 53
Caulobacter crescentus NA1000 0.17 CCNA_03226 basic amino acid/polyamine antiporter (APA) family transporter 0.34 CCNA_03822 formamidopyrimidine-DNA glycosylase low > 66
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_03226 basic amino acid/polyamine antiporter (APA) family transporter 0.34 CCNA_03822 formamidopyrimidine-DNA glycosylase low > 67
Mycobacterium tuberculosis H37Rv 0.07 Rv1979c Possible conserved permease 0.25 Rv2924c Probable formamidopyrimidine-DNA glycosylase Fpg (FAPY-DNA glycosylase) low > 58
Xanthomonas campestris pv. campestris strain 8004 0.07 Xcc-8004.4819.1 Amino acid permease 0.53 Xcc-8004.5281.1 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 74
Acinetobacter radioresistens SK82 0.06 MPMX26_01037 Aromatic amino acid transport protein AroP 0.47 MPMX26_02486 Formamidopyrimidine-DNA glycosylase — —

Not shown: 1 genomes with orthologs for CSW01_19400 only; 68 genomes with orthologs for CSW01_01175 only