Conservation of cofitness between CSW01_00405 and CSW01_01005 in Vibrio cholerae E7946 ATCC 55056

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00405 EamA family transporter 1.0 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.46 6
Alteromonas macleodii MIT1002 0.55 MIT1002_03265 carboxylate/amino acid/amine transporter 0.36 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J low > 70
Marinobacter adhaerens HP15 0.55 HP15_3914 carboxylate/amino acid/amine transporter 0.31 HP15_2563 protein containing DUF519 low > 73
Rahnella sp. WP5 0.54 EX31_RS14725 DMT family transporter 0.65 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 89
Serratia liquefaciens MT49 0.53 IAI46_01025 DMT family transporter 0.63 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 87
Enterobacter sp. TBS_079 0.53 MPMX20_04453 Biotin transporter 0.64 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J low > 85
Klebsiella pneumoniae MKP103 0.52 KDGMDA_09765 carboxylate/amino acid/amine transporter 0.64 KDGMDA_07435 Ribosomal RNA large subunit methyltransferase J low > 95
Enterobacter asburiae PDN3 0.52 EX28DRAFT_4492 Carboxylate/Amino Acid/Amine Transporter 0.65 EX28DRAFT_4062 Protein involved in catabolism of external DNA low > 76
Pectobacterium carotovorum WPP14 0.51 HER17_RS20695 carboxylate/amino acid/amine transporter 0.62 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Pantoea sp. MT58 0.51 IAI47_18325 DMT family transporter 0.61 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Pantoea agglomerans CFBP13505 P0401 0.51 PagCFBP13505_RS15305 DMT family transporter 0.61 PagCFBP13505_RS17840 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Dickeya dianthicola ME23 0.49 DZA65_RS00865 DMT family transporter 0.65 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Escherichia fergusonii Becca 0.49 EFB2_04810 Biotin transporter 0.65 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Escherichia coli BW25113 0.49 b3827 yigM predicted inner membrane protein (NCBI) 0.65 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_04224 hypothetical protein 0.65 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 74
Escherichia coli ECRC99 0.49 KEDOAH_13815 bioP biotin transporter 0.65 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli BL21 0.49 ECD_03706 putative inner membrane EamA-like transporter 0.65 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC100 0.49 OKFHMN_14335 bioP biotin transporter 0.65 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 79
Escherichia coli ECRC62 0.49 BNILDI_05065 bioP biotin transporter 0.65 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 75
Escherichia coli ECRC98 0.49 JDDGAC_17960 bioP biotin transporter 0.65 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 87
Escherichia coli Nissle 1917 0.49 ECOLIN_RS26230 biotin transporter 0.65 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC102 0.49 NIAGMN_12090 bioP biotin transporter 0.65 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Escherichia coli ECRC101 0.49 MCAODC_04840 bioP biotin transporter 0.65 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 87
Escherichia coli ECOR38 0.49 HEPCGN_13035 bioP biotin transporter 0.65 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.33 74
Dickeya dianthicola 67-19 0.49 HGI48_RS00810 DMT family transporter 0.65 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 71
Escherichia coli ECOR27 0.49 NOLOHH_06465 bioP biotin transporter 0.65 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 76
Pseudomonas stutzeri RCH2 0.49 Psest_1275 Carboxylate/Amino Acid/Amine Transporter 0.42 Psest_0408 Protein involved in catabolism of external DNA low > 67
Klebsiella michiganensis M5al 0.48 BWI76_RS01270 hypothetical protein 0.64 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 92
Dickeya dadantii 3937 0.48 DDA3937_RS22535 DMT family transporter 0.65 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_04252 Biotin transporter 0.39 GEMAOFIL_00676 Ribosomal RNA large subunit methyltransferase J low > 96
Pseudomonas orientalis W4I3 0.47 QF045_RS22410 carboxylate/amino acid/amine transporter 0.38 QF045_RS05260 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 93
Pseudomonas sp. SVBP6 0.47 COO64_RS21940 carboxylate/amino acid/amine transporter 0.42 COO64_RS17660 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 93
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_18295 hypothetical protein 0.38 AO353_12840 lactate dehydrogenase low > 101
Pseudomonas sp. DMC3 0.47 GFF2353 Biotin transporter 0.40 GFF3149 Ribosomal RNA large subunit methyltransferase J low > 89
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_4455 MadN protein 0.38 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_545 MadN protein 0.38 Pf1N1B4_1481 Protein involved in catabolism of external DNA low > 87
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_2678 MadN protein 0.38 Pf6N2E2_3679 Protein involved in catabolism of external DNA low > 103
Pseudomonas aeruginosa MRSN321 0.46 DY961_RS15545 carboxylate/amino acid/amine transporter 0.43 DY961_RS10910 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 100
Pseudomonas aeruginosa PA14 0.46 IKLFDK_17830 carboxylate/amino acid/amine transporter 0.43 IKLFDK_28440 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 98
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_3822 Protein of unknown function DUF6 0.38 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas sp. BP01 0.46 JOY50_RS01245 carboxylate/amino acid/amine transporter 0.41 JOY50_RS09970 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 84
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_3822 Protein of unknown function DUF6 0.38 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_04220 hypothetical protein 0.38 AO356_08990 lactate dehydrogenase low > 104
Pseudomonas aeruginosa PUPa3 0.46 DQ20_RS41520 carboxylate/amino acid/amine transporter 0.43 DQ20_RS51160 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 101
Pseudomonas segetis P6 0.46 ACVTMO_RS16110 carboxylate/amino acid/amine transporter 0.41 ACVTMO_RS20915 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Pseudomonas fluorescens SBW25 0.45 PFLU_RS22205 EamA family transporter 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS22205 EamA family transporter 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas sp. RS175 0.45 PFR28_00752 Biotin transporter 0.39 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Pseudomonas sp. S08-1 0.45 OH686_12480 MadN protein 0.40 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Pseudomonas simiae WCS417 0.45 PS417_20510 membrane protein 0.38 PS417_02200 lactate dehydrogenase — —
Pseudomonas putida KT2440 0.45 PP_4537 conserved membrane protein of unknown function 0.44 PP_4945 23S rRNA m(6)A2030 methyltransferase low > 96

Not shown: 1 genomes with orthologs for CSW01_00405 only; 48 genomes with orthologs for CSW01_01005 only