Conservation of cofitness between CSW01_01005 and CSW01_00405 in Vibrio cholerae E7946 ATCC 55056

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 1.0 CSW01_00405 EamA family transporter 0.46 10
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J 0.49 OHPLBJKB_04224 hypothetical protein low > 74
Escherichia coli BW25113 0.65 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) 0.49 b3827 yigM predicted inner membrane protein (NCBI) low > 76
Dickeya dadantii 3937 0.65 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.48 DDA3937_RS22535 DMT family transporter low > 74
Escherichia coli BL21 0.65 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent 0.49 ECD_03706 putative inner membrane EamA-like transporter low > 61
Escherichia fergusonii Becca 0.65 EFB2_00316 Ribosomal RNA large subunit methyltransferase J 0.49 EFB2_04810 Biotin transporter low > 86
Escherichia coli ECRC102 0.65 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.49 NIAGMN_12090 bioP biotin transporter low > 80
Escherichia coli Nissle 1917 0.65 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.49 ECOLIN_RS26230 biotin transporter — —
Escherichia coli ECRC62 0.65 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.49 BNILDI_05065 bioP biotin transporter low > 75
Escherichia coli ECRC99 0.65 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.49 KEDOAH_13815 bioP biotin transporter — —
Escherichia coli ECRC98 0.65 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.49 JDDGAC_17960 bioP biotin transporter low > 87
Escherichia coli ECOR27 0.65 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.49 NOLOHH_06465 bioP biotin transporter low > 76
Dickeya dianthicola 67-19 0.65 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.49 HGI48_RS00810 DMT family transporter low > 71
Escherichia coli ECRC100 0.65 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.49 OKFHMN_14335 bioP biotin transporter low > 79
Escherichia coli ECRC101 0.65 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.49 MCAODC_04840 bioP biotin transporter low > 87
Enterobacter asburiae PDN3 0.65 EX28DRAFT_4062 Protein involved in catabolism of external DNA 0.52 EX28DRAFT_4492 Carboxylate/Amino Acid/Amine Transporter low > 76
Rahnella sp. WP5 0.65 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.54 EX31_RS14725 DMT family transporter low > 89
Dickeya dianthicola ME23 0.65 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.49 DZA65_RS00865 DMT family transporter low > 75
Escherichia coli ECOR38 0.65 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.49 HEPCGN_13035 bioP biotin transporter 0.33 39
Enterobacter sp. TBS_079 0.64 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J 0.53 MPMX20_04453 Biotin transporter low > 85
Klebsiella pneumoniae MKP103 0.64 KDGMDA_07435 Ribosomal RNA large subunit methyltransferase J 0.52 KDGMDA_09765 carboxylate/amino acid/amine transporter low > 95
Klebsiella michiganensis M5al 0.64 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.48 BWI76_RS01270 hypothetical protein low > 92
Serratia liquefaciens MT49 0.63 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.53 IAI46_01025 DMT family transporter low > 87
Pectobacterium carotovorum WPP14 0.62 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.51 HER17_RS20695 carboxylate/amino acid/amine transporter low > 75
Pantoea sp. MT58 0.61 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.51 IAI47_18325 DMT family transporter low > 76
Pantoea agglomerans CFBP13505 P0401 0.61 PagCFBP13505_RS17840 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.51 PagCFBP13505_RS15305 DMT family transporter low > 74
Pseudomonas putida KT2440 0.44 PP_4945 23S rRNA m(6)A2030 methyltransferase 0.45 PP_4537 conserved membrane protein of unknown function low > 96
Pseudomonas aeruginosa PUPa3 0.43 DQ20_RS51160 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.46 DQ20_RS41520 carboxylate/amino acid/amine transporter low > 101
Pseudomonas aeruginosa MRSN321 0.43 DY961_RS10910 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.46 DY961_RS15545 carboxylate/amino acid/amine transporter low > 100
Pseudomonas aeruginosa PA14 0.43 IKLFDK_28440 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.46 IKLFDK_17830 carboxylate/amino acid/amine transporter low > 98
Pseudomonas stutzeri RCH2 0.42 Psest_0408 Protein involved in catabolism of external DNA 0.49 Psest_1275 Carboxylate/Amino Acid/Amine Transporter low > 67
Pseudomonas sp. SVBP6 0.42 COO64_RS17660 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.47 COO64_RS21940 carboxylate/amino acid/amine transporter low > 93
Pseudomonas sp. BP01 0.41 JOY50_RS09970 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.46 JOY50_RS01245 carboxylate/amino acid/amine transporter low > 84
Pseudomonas segetis P6 0.41 MPMX49_04216 Ribosomal RNA large subunit methyltransferase J 0.46 MPMX49_03251 Biotin transporter low > 75
Pseudomonas sp. DMC3 0.40 GFF3149 Ribosomal RNA large subunit methyltransferase J 0.47 GFF2353 Biotin transporter low > 89
Pseudomonas sp. S08-1 0.40 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.45 OH686_12480 MadN protein low > 80
Pseudomonas sp. RS175 0.39 PFR28_05056 Ribosomal RNA large subunit methyltransferase J 0.45 PFR28_00752 Biotin transporter low > 88
Pseudomonas lactucae CFBP13502 0.39 GEMAOFIL_00676 Ribosomal RNA large subunit methyltransferase J 0.47 GEMAOFIL_04252 Biotin transporter low > 96
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1481 Protein involved in catabolism of external DNA 0.47 Pf1N1B4_545 MadN protein low > 87
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4772 Protein of unknown function DUF519 0.46 Psyr_3822 Protein of unknown function DUF6 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4772 Protein of unknown function DUF519 0.46 Psyr_3822 Protein of unknown function DUF6 low > 86
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_3679 Protein involved in catabolism of external DNA 0.47 Pf6N2E2_2678 MadN protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_08990 lactate dehydrogenase 0.46 AO356_04220 hypothetical protein low > 104
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_219 Protein involved in catabolism of external DNA 0.47 PfGW456L13_4455 MadN protein low > 87
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 PFLU_RS22205 EamA family transporter low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 PFLU_RS22205 EamA family transporter low > 109
Pseudomonas simiae WCS417 0.38 PS417_02200 lactate dehydrogenase 0.45 PS417_20510 membrane protein — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_12840 lactate dehydrogenase 0.47 AO353_18295 hypothetical protein low > 101
Pseudomonas orientalis W4I3 0.38 QF045_RS05260 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.47 QF045_RS22410 carboxylate/amino acid/amine transporter low > 93
Alteromonas macleodii MIT1002 0.36 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J 0.55 MIT1002_03265 carboxylate/amino acid/amine transporter low > 70
Marinobacter adhaerens HP15 0.31 HP15_2563 protein containing DUF519 0.55 HP15_3914 carboxylate/amino acid/amine transporter low > 73

Not shown: 48 genomes with orthologs for CSW01_01005 only; 1 genomes with orthologs for CSW01_00405 only