Conservation of cofitness between CSW01_13705 and CSW01_00370 in Vibrio cholerae E7946 ATCC 55056

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13705 RNA-binding transcriptional accessory protein 1.0 CSW01_00370 LysR family transcriptional regulator 0.38 19
Enterobacter sp. TBS_079 0.68 MPMX20_04294 Protein YhgF 0.22 MPMX20_04648 HTH-type transcriptional regulator YidZ low > 85
Enterobacter asburiae PDN3 0.67 EX28DRAFT_4136 Transcriptional accessory protein 0.22 EX28DRAFT_3995 Transcriptional regulator low > 76
Klebsiella pneumoniae MKP103 0.67 KDGMDA_06990 Protein YhgF 0.22 KDGMDA_08715 HTH-type transcriptional regulator YidZ low > 95
Escherichia coli ECOR38 0.67 HEPCGN_15835 yhgF Protein YhgF 0.22 HEPCGN_13655 yidZ HTH-type transcriptional regulator YidZ low > 88
Escherichia coli Nissle 1917 0.67 ECOLIN_RS19465 Tex family protein 0.22 ECOLIN_RS21370 HTH-type transcriptional regulator YidZ low > 55
Escherichia fergusonii Becca 0.67 EFB2_00421 Protein YhgF 0.22 EFB2_04921 HTH-type transcriptional regulator YidZ low > 86
Escherichia coli ECRC98 0.67 JDDGAC_20655 yhgF Protein YhgF 0.22 JDDGAC_18570 yidZ HTH-type transcriptional regulator YidZ low > 87
Escherichia coli ECRC102 0.67 NIAGMN_14795 yhgF Protein YhgF 0.22 NIAGMN_12705 yidZ HTH-type transcriptional regulator YidZ low > 80
Escherichia coli ECRC99 0.67 KEDOAH_11115 yhgF Protein YhgF 0.22 KEDOAH_13200 yidZ HTH-type transcriptional regulator YidZ — —
Escherichia coli ECRC101 0.67 MCAODC_07555 yhgF Protein YhgF 0.22 MCAODC_05460 yidZ HTH-type transcriptional regulator YidZ low > 87
Escherichia coli ECRC100 0.67 OKFHMN_17025 yhgF Protein YhgF 0.22 OKFHMN_14950 yidZ HTH-type transcriptional regulator YidZ low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00296 Protein YhgF 0.22 OHPLBJKB_04342 HTH-type transcriptional regulator YidZ low > 74
Escherichia coli ECRC62 0.67 BNILDI_02705 yhgF Protein YhgF 0.22 BNILDI_04430 yidZ HTH-type transcriptional regulator YidZ low > 75
Escherichia coli ECOR27 0.67 NOLOHH_08815 yhgF Protein YhgF 0.22 NOLOHH_07100 yidZ HTH-type transcriptional regulator YidZ low > 76
Escherichia coli BL21 0.67 ECD_03259 putative transcriptional accessory protein 0.22 ECD_03595 putative DNA-binding transcriptional regulator low > 61
Escherichia coli BW25113 0.67 b3407 yhgF orf, hypothetical protein (VIMSS) 0.23 b3711 yidZ predicted DNA-binding transcriptional regulator (NCBI) low > 76
Klebsiella michiganensis M5al 0.67 BWI76_RS26655 transcription accessory protein 0.19 BWI76_RS00095 DNA-binding transcriptional regulator low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF611 Transcription accessory protein (S1 RNA-binding domain) 0.22 GFF1743 Putative LysR-family transcriptional regulator YidZ low > 78
Dickeya dianthicola 67-19 0.66 HGI48_RS19770 RNA-binding transcriptional accessory protein 0.19 HGI48_RS07495 LysR family transcriptional regulator low > 71
Rahnella sp. WP5 0.65 EX31_RS04840 RNA-binding transcriptional accessory protein 0.21 EX31_RS00910 LysR family transcriptional regulator low > 89
Shewanella loihica PV-4 0.64 Shew_3634 RNA-binding S1 domain-containing protein (RefSeq) 0.44 Shew_3589 LysR family transcriptional regulator (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_3906 Transcription accessory protein (S1 RNA-binding domain) 0.21 Pf6N2E2_1236 Transcriptional regulator, LysR family low > 103
Shewanella amazonensis SB2B 0.64 Sama_3508 hypothetical protein (RefSeq) 0.41 Sama_3449 regulatory protein, LysR (RefSeq) low > 62
Pseudomonas lactucae CFBP13502 0.64 GEMAOFIL_00460 Protein YhgF 0.21 GEMAOFIL_02815 Nodulation protein D 2 low > 96
Pseudomonas sp. RS175 0.64 PFR28_04867 Protein YhgF 0.22 PFR28_03920 Nodulation protein D 2 low > 88
Shewanella oneidensis MR-1 0.64 SO4629 conserved hypothetical protein (NCBI ptt file) 0.42 SO4556 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Pseudomonas sp. DMC3 0.64 GFF4184 Protein YhgF 0.21 GFF2774 PCP degradation transcriptional activation protein low > 89
Shewanella sp. ANA-3 0.64 Shewana3_4013 RNA-binding S1 domain-containing protein (RefSeq) 0.42 Shewana3_3949 LysR family transcriptional regulator (RefSeq) low > 73
Pseudomonas sp. SVBP6 0.63 COO64_RS00705 Tex family protein 0.23 COO64_RS24425 LysR family transcriptional regulator low > 93
Pseudomonas sp. S08-1 0.63 OH686_11100 Transcription accessory protein (S1 RNA-binding domain) 0.20 OH686_17940 Transcriptional regulator, LysR family low > 80
Pseudomonas aeruginosa MRSN321 0.63 DY961_RS11875 Tex family protein 0.22 DY961_RS11810 LysR family transcriptional regulator low > 100
Pseudomonas aeruginosa PUPa3 0.63 DQ20_RS50240 Tex family protein 0.22 DQ20_RS50300 LysR family transcriptional regulator low > 101
Pseudomonas aeruginosa PA14 0.62 IKLFDK_27470 RNA-binding transcriptional accessory protein 0.22 IKLFDK_27530 LysR family transcriptional regulator low > 98
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS15750 Tex family protein 0.17 ABZR86_RS07360 LysR family transcriptional regulator low > 74
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS01545 RNA-binding transcriptional accessory protein 0.19 RALBFv3_RS02770 LysR family transcriptional regulator low > 76
Ralstonia solanacearum UW163 0.59 UW163_RS14855 RNA-binding transcriptional accessory protein 0.19 UW163_RS10955 LysR family transcriptional regulator — —
Ralstonia solanacearum GMI1000 0.59 RS_RS08180 RNA-binding transcriptional accessory protein 0.19 RS_RS10140 LysR family transcriptional regulator low > 80
Ralstonia solanacearum PSI07 0.59 RPSI07_RS15945 RNA-binding transcriptional accessory protein 0.20 RPSI07_RS14540 LysR family transcriptional regulator low > 81
Azospirillum sp. SherDot2 0.58 MPMX19_04277 Protein YhgF 0.21 MPMX19_03531 PCP degradation transcriptional activation protein low > 112
Castellaniella sp019104865 MT123 0.55 ABCV34_RS01870 Tex family protein 0.21 ABCV34_RS12175 LysR family transcriptional regulator low > 48
Rhizobium sp. OAE497 0.54 ABIE40_RS05475 Tex family protein 0.21 ABIE40_RS06590 LysR family transcriptional regulator low > 107
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4649 Transcription accessory protein (S1 RNA-binding domain) 0.20 GFF204 Transcriptional regulator, LysR family low > 90
Agrobacterium fabrum C58 0.52 Atu0648 hypothetical protein 0.20 Atu5197 LysR family transcriptional regulator low > 89
Sinorhizobium meliloti 1021 0.51 SMc02644 hypothetical protein 0.20 SMc02893 transcriptional regulator low > 103

Not shown: 66 genomes with orthologs for CSW01_13705 only; 2 genomes with orthologs for CSW01_00370 only