Conservation of cofitness between Atu3227 and Atu4098 in Agrobacterium fabrum C58

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu3227 AraC family transcriptional regulator 1.0 Atu4098 quinolinate synthetase 0.29 9
Sinorhizobium meliloti 1021 0.59 SM_b20626 AraC family transcriptional regulator 0.56 SMc02601 quinolinate synthetase low > 103
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS05360 AraC family transcriptional regulator 0.24 HSERO_RS11065 quinolinate synthetase low > 78
Azospirillum sp. SherDot2 0.40 MPMX19_05306 RCS-specific HTH-type transcriptional activator RclR 0.61 MPMX19_05670 Quinolinate synthase A low > 112
Enterobacter sp. TBS_079 0.38 MPMX20_02690 RCS-specific HTH-type transcriptional activator RclR 0.22 MPMX20_01377 Quinolinate synthase A low > 85
Enterobacter asburiae PDN3 0.38 EX28DRAFT_0775 AraC-type DNA-binding domain-containing proteins 0.23 EX28DRAFT_2245 quinolinate synthetase (EC 2.5.1.72) low > 76
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS12385 AraC family transcriptional regulator 0.26 ABZR87_RS00355 quinolinate synthase NadA low > 80
Pectobacterium carotovorum WPP14 0.37 HER17_RS16840 AraC family transcriptional regulator 0.23 HER17_RS14820 quinolinate synthase NadA low > 75
Klebsiella michiganensis M5al 0.36 BWI76_RS14965 AraC family transcriptional regulator 0.23 BWI76_RS08580 quinolinate synthetase low > 92
Pantoea sp. MT58 0.35 IAI47_17685 AraC family transcriptional regulator 0.23 IAI47_13635 quinolinate synthase NadA low > 76
Klebsiella pneumoniae MKP103 0.35 KDGMDA_21720 AraC family transcriptional regulator 0.22 KDGMDA_16840 quinolinate synthase NadA low > 95
Pantoea agglomerans CFBP13505 P0401 0.35 PagCFBP13505_RS21005 AraC family transcriptional regulator 0.23 PagCFBP13505_RS03665 quinolinate synthase NadA low > 74
Pseudomonas sp. BP01 0.34 JOY50_RS02450 AraC family transcriptional regulator 0.23 JOY50_RS01740 nadA quinolinate synthase NadA low > 84
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_29610 AraC family transcriptional regulator 0.23 AO356_18145 quinolinate synthase A low > 104
Pseudomonas sp. DMC3 0.34 GFF1242 RCS-specific HTH-type transcriptional activator RclR 0.23 GFF5174 Quinolinate synthase A low > 89
Pseudomonas orientalis W4I3 0.34 QF045_RS16695 AraC family transcriptional regulator 0.22 QF045_RS24510 quinolinate synthase NadA low > 93
Pseudomonas lactucae CFBP13502 0.32 GEMAOFIL_04027 RCS-specific HTH-type transcriptional activator RclR 0.22 GEMAOFIL_04613 Quinolinate synthase A low > 96
Pseudomonas simiae WCS417 0.32 PS417_11055 AraC family transcriptional regulator 0.22 PS417_22385 quinolinate synthase A low > 88
Rahnella sp. WP5 0.32 EX31_RS02060 AraC family transcriptional regulator 0.22 EX31_RS23525 quinolinate synthase NadA low > 89
Pseudomonas fluorescens SBW25 0.30 PFLU_RS11685 AraC family transcriptional regulator 0.22 PFLU_RS24025 quinolinate synthase NadA low > 109
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS11685 AraC family transcriptional regulator 0.22 PFLU_RS24025 quinolinate synthase NadA low > 109
Paraburkholderia sabiae LMG 24235 0.27 QEN71_RS09140 AraC family transcriptional regulator 0.24 QEN71_RS03060 quinolinate synthase NadA low > 153
Burkholderia phytofirmans PsJN 0.23 BPHYT_RS30130 AraC family transcriptional regulator 0.23 BPHYT_RS15650 quinolinate synthetase low > 109
Variovorax sp. OAS795 0.23 ABID97_RS27895 AraC family transcriptional regulator 0.24 ABID97_RS07415 quinolinate synthase NadA low > 91
Paraburkholderia graminis OAS925 0.22 ABIE53_006336 AraC-like DNA-binding protein 0.24 ABIE53_003294 quinolinate synthase low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF4025 Transcriptional regulator, AraC family 0.25 GFF1216 Quinolinate synthetase (EC 2.5.1.72) low > 90
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_3790 Transcriptional regulator, AraC family 0.23 PfGW456L13_1863 Quinolinate synthetase (EC 2.5.1.72) low > 87
Rhodanobacter denitrificans FW104-10B01 0.21 LRK54_RS16505 AraC family transcriptional regulator 0.52 LRK54_RS13900 quinolinate synthase NadA low > 59
Acinetobacter baumannii LAC-4 0.20 RR41_RS12375 AraC family transcriptional regulator 0.24 RR41_RS15700 quinolinate synthase NadA low > 55
Rhodanobacter denitrificans MT42 0.19 LRK55_RS09215 AraC family transcriptional regulator 0.52 LRK55_RS13615 quinolinate synthase NadA low > 63
Rhodanobacter sp. FW510-T8 0.18 OKGIIK_14570 araC AraC family transcriptional regulator 0.52 OKGIIK_00930 nadA quinolinate synthase NadA low > 53
Pseudomonas sp. RS175 0.18 PFR28_01897 HTH-type transcriptional regulator MtrA 0.23 PFR28_03388 Quinolinate synthase A low > 88
Rhodanobacter sp000427505 FW510-R12 0.18 LRK53_RS10015 AraC family transcriptional regulator 0.53 LRK53_RS14710 quinolinate synthase NadA low > 59
Escherichia coli ECRC102 0.17 NIAGMN_07175 rclR DNA-binding transcriptional regulator RclR 0.23 NIAGMN_04810 nadA quinolinate synthase NadA low > 80
Escherichia coli ECRC98 0.17 JDDGAC_12760 rclR DNA-binding transcriptional regulator RclR 0.23 JDDGAC_10415 nadA quinolinate synthase NadA low > 87
Escherichia coli ECRC100 0.17 OKFHMN_09110 rclR DNA-binding transcriptional regulator RclR 0.23 OKFHMN_06760 nadA quinolinate synthase NadA 0.57 38
Escherichia coli ECRC101 0.17 MCAODC_28335 rclR DNA-binding transcriptional regulator RclR 0.23 MCAODC_25980 nadA quinolinate synthase NadA low > 87
Escherichia coli ECRC99 0.17 KEDOAH_18855 rclR DNA-binding transcriptional regulator RclR 0.23 KEDOAH_21205 nadA quinolinate synthase NadA — —
Escherichia coli BW25113 0.17 b0305 ykgD predicted DNA-binding transcriptional regulator (NCBI) 0.24 b0750 nadA quinolinate synthetase (NCBI) low > 76
Escherichia coli BL21 0.17 ECD_00261 reactive chlorine species (RCS)-specific activator of the rcl genes 0.24 ECD_00703 quinolinate synthase, subunit A low > 61
Escherichia coli ECOR27 0.16 NOLOHH_01925 rclR DNA-binding transcriptional regulator RclR 0.24 NOLOHH_23190 nadA quinolinate synthase NadA low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_03377 RCS-specific HTH-type transcriptional activator RclR 0.23 OHPLBJKB_02963 Quinolinate synthase A low > 74
Escherichia coli Nissle 1917 0.16 ECOLIN_RS01995 reactive chlorine-specific transcriptional regulator RclR 0.23 ECOLIN_RS03990 quinolinate synthase NadA low > 55
Escherichia fergusonii Becca 0.16 EFB2_03735 RCS-specific HTH-type transcriptional activator RclR 0.23 EFB2_03356 Quinolinate synthase A low > 86
Escherichia coli ECOR38 0.16 HEPCGN_07635 rclR DNA-binding transcriptional regulator RclR 0.24 HEPCGN_01515 nadA quinolinate synthase NadA low > 88
Escherichia coli ECRC62 0.16 BNILDI_00050 rclR DNA-binding transcriptional regulator RclR 0.24 BNILDI_21185 nadA quinolinate synthase NadA low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF4466 Putative HTH-type transcriptional regulator ykgD 0.23 GFF4 Quinolinate synthetase (EC 2.5.1.72) — —
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS27175 AraC family transcriptional regulator 0.24 RR42_RS17020 quinolinate synthetase low > 128

Not shown: 2 genomes with orthologs for Atu3227 only; 63 genomes with orthologs for Atu4098 only