Conservation of cofitness between Atu0035 and Atu2718 in Agrobacterium fabrum C58

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0035 phosphoenolpyruvate carboxykinase 1.0 Atu2718 homoserine O-succinyltransferase 0.50 20
Sinorhizobium meliloti 1021 0.80 SMc02562 phosphoenolpyruvate carboxykinase 0.85 SMc03797 homoserine O-succinyltransferase 0.37 82
Rhizobium sp. OAE497 0.80 ABIE40_RS19415 phosphoenolpyruvate carboxykinase 0.86 ABIE40_RS18590 homoserine O-succinyltransferase low > 107
Dinoroseobacter shibae DFL-12 0.64 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) 0.62 Dshi_1593 Homoserine O-succinyltransferase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.63 PGA1_c01140 phosphoenolpyruvate carboxykinase 0.61 PGA1_c14560 homoserine O-succinyltransferase MetA 0.60 45
Shewanella amazonensis SB2B 0.47 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) 0.45 Sama_1374 homoserine O-succinyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.46 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) 0.44 Shew_2551 homoserine O-succinyltransferase (RefSeq) low > 60
Shewanella sp. ANA-3 0.45 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) 0.43 Shewana3_2772 homoserine O-succinyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.45 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) 0.44 SO1676 metA homoserine O-succinyltransferase (NCBI ptt file) low > 76
Escherichia coli BW25113 0.44 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) 0.44 b4013 metA homoserine O-succinyltransferase (NCBI) low > 76
Escherichia coli BL21 0.44 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] 0.44 ECD_03885 homoserine O-transsuccinylase low > 60
Escherichia coli ECOR27 0.44 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) 0.44 NOLOHH_05420 metA homoserine O-succinyltransferase 0.50 41
Escherichia fergusonii Becca 0.44 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) 0.44 EFB2_04597 Homoserine O-succinyltransferase low > 86
Escherichia coli ECRC62 0.44 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) 0.44 BNILDI_06100 metA homoserine O-succinyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) 0.44 OHPLBJKB_04037 Homoserine O-succinyltransferase low > 73
Escherichia coli ECOR38 0.44 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) 0.44 HEPCGN_11915 metA homoserine O-succinyltransferase low > 85
Escherichia coli Nissle 1917 0.44 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) 0.44 ECOLIN_RS25515 homoserine O-succinyltransferase — —
Escherichia coli ECRC101 0.44 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) 0.44 MCAODC_03775 metA homoserine O-succinyltransferase — —
Serratia liquefaciens MT49 0.44 IAI46_10700 phosphoenolpyruvate carboxykinase (ATP) 0.42 IAI46_23200 homoserine O-succinyltransferase low > 86
Escherichia coli ECRC101 0.44 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) 0.44 OKFHMN_13275 metA homoserine O-succinyltransferase — —
Escherichia coli ECRC99 0.44 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) 0.44 KEDOAH_14885 metA homoserine O-succinyltransferase — —
Escherichia coli ECRC98 0.44 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) 0.44 JDDGAC_16900 metA homoserine O-succinyltransferase — —
Escherichia coli ECRC102 0.44 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) 0.44 NIAGMN_11025 metA homoserine O-succinyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.43 GFF1350 Homoserine O-succinyltransferase (EC 2.3.1.46) low > 78
Erwinia tracheiphila SCR3 0.44 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) 0.43 LU632_RS22410 metA homoserine O-succinyltransferase low > 74
Dickeya dianthicola 67-19 0.43 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) 0.43 HGI48_RS19155 homoserine O-succinyltransferase low > 71
Pantoea sp. MT58 0.43 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) 0.43 IAI47_18015 homoserine O-succinyltransferase low > 76
Rahnella sp. WP5 0.43 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) 0.44 EX31_RS11735 homoserine O-succinyltransferase low > 89
Alteromonas macleodii MIT1002 0.43 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] 0.44 MIT1002_01112 Homoserine O-succinyltransferase low > 70
Dickeya dianthicola ME23 0.43 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) 0.43 DZA65_RS20275 homoserine O-succinyltransferase low > 75
Pectobacterium carotovorum WPP14 0.43 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) 0.44 HER17_RS02285 homoserine O-succinyltransferase low > 75
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) 0.42 EX28DRAFT_4331 homoserine O-succinyltransferase (EC 2.3.1.46) low > 76
Enterobacter sp. TBS_079 0.43 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) 0.43 MPMX20_00230 Homoserine O-succinyltransferase low > 85
Dickeya dadantii 3937 0.43 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) 0.43 DDA3937_RS19065 homoserine O-succinyltransferase low > 74
Klebsiella michiganensis M5al 0.43 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) 0.44 BWI76_RS01655 homoserine O-succinyltransferase low > 92
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.43 CSW01_08100 homoserine O-succinyltransferase low > 62
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS06685 phosphoenolpyruvate carboxykinase (ATP) 0.48 ABI39_RS10360 homoserine O-succinyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS10065 phosphoenolpyruvate carboxykinase (ATP) 0.47 HMPREF1058_RS14680 homoserine O-succinyltransferase — —
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS07235 phosphoenolpyruvate carboxykinase (ATP) 0.49 HMPREF1078_RS10000 homoserine O-succinyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.39 BT2790 phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) 0.50 BT2413 homoserine O-succinyltransferase (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS01170 phosphoenolpyruvate carboxykinase (ATP) 0.48 HMPREF1181_RS00105 homoserine O-succinyltransferase — —
Bacteroides ovatus ATCC 8483 0.39 BACOVA_02011 phosphoenolpyruvate carboxykinase (ATP) 0.51 BACOVA_03007 homoserine O-succinyltransferase — —

Not shown: 22 genomes with orthologs for Atu0035 only; 4 genomes with orthologs for Atu2718 only