Conservation of cofitness between Atu2832 and Atu2464 in Agrobacterium fabrum C58

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2832 tRNA modification GTPase 1.0 Atu2464 formyltetrahydrofolate deformylase 0.50 11
Rhizobium sp. OAE497 0.52 ABIE40_RS19220 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.88 ABIE40_RS00960 formyltetrahydrofolate deformylase low > 107
Sinorhizobium meliloti 1021 0.51 SMc02797 tRNA modification GTPase TrmE 0.87 SMc04154 formyltetrahydrofolate deformylase — —
Rhodopseudomonas palustris CGA009 0.37 TX73_001535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.47 TX73_020890 formyltetrahydrofolate deformylase low > 86
Rhodospirillum rubrum S1H 0.33 Rru_A3624 tRNA modification GTPase TrmE (NCBI) 0.48 Rru_A0556 Formyltetrahydrofolate deformylase (NCBI) — —
Shewanella amazonensis SB2B 0.30 Sama_0008 trmE tRNA modification GTPase TrmE (RefSeq) 0.35 Sama_1134 purU formyltetrahydrofolate deformylase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_00015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.34 CSW01_09940 formyltetrahydrofolate deformylase low > 62
Escherichia coli ECRC99 0.29 KEDOAH_13165 tRNA modification GTPase MnmE 0.35 KEDOAH_25565 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC98 0.29 JDDGAC_18605 tRNA modification GTPase MnmE 0.35 JDDGAC_06005 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC101 0.29 MCAODC_05495 tRNA modification GTPase MnmE 0.35 MCAODC_21690 purU formyltetrahydrofolate deformylase — —
Enterobacter sp. TBS_079 0.29 MPMX20_04650 tRNA modification GTPase MnmE 0.35 MPMX20_02596 Formyltetrahydrofolate deformylase low > 85
Escherichia coli ECRC102 0.29 NIAGMN_12740 tRNA modification GTPase MnmE 0.35 NIAGMN_27665 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC101 0.29 OKFHMN_14985 tRNA modification GTPase MnmE 0.35 OKFHMN_28570 purU formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_10455 tRNA modification GTPase MnmE 0.48 AO353_07640 formyltetrahydrofolate deformylase low > 101
Lysobacter sp. OAE881 0.29 ABIE51_RS00735 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.48 ABIE51_RS07700 formyltetrahydrofolate deformylase low > 62
Escherichia coli Nissle 1917 0.29 ECOLIN_RS21345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.35 ECOLIN_RS07460 formyltetrahydrofolate deformylase low > 52
Escherichia coli ECRC62 0.29 BNILDI_04405 tRNA modification GTPase MnmE 0.35 BNILDI_18635 purU formyltetrahydrofolate deformylase — —
Escherichia fergusonii Becca 0.29 EFB2_04925 tRNA modification GTPase MnmE 0.35 EFB2_02694 Formyltetrahydrofolate deformylase low > 86
Alteromonas macleodii MIT1002 0.29 MIT1002_04128 tRNA modification GTPase MnmE 0.40 MIT1002_00404 Formyltetrahydrofolate deformylase — —
Escherichia coli BW25113 0.29 b3706 trmE tRNA modification GTPase (NCBI) 0.35 b1232 purU formyltetrahydrofolate deformylase (NCBI) low > 76
Escherichia coli ECOR38 0.29 HEPCGN_13680 tRNA modification GTPase MnmE 0.35 HEPCGN_25030 purU formyltetrahydrofolate deformylase low > 85
Escherichia coli ECOR27 0.29 NOLOHH_07125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.35 NOLOHH_20480 purU formyltetrahydrofolate deformylase — —
Escherichia coli BL21 0.29 ECD_03590 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase 0.35 ECD_01208 formyltetrahydrofolate hydrolase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_04346 tRNA modification GTPase MnmE 0.35 OHPLBJKB_02453 Formyltetrahydrofolate deformylase — —
Pseudomonas simiae WCS417 0.29 PS417_28540 tRNA modification GTPase MnmE 0.48 PS417_26170 formyltetrahydrofolate deformylase — —
Klebsiella michiganensis M5al 0.28 BWI76_RS00050 tRNA modification GTPase 0.35 BWI76_RS17290 formyltetrahydrofolate deformylase — —
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.5407.1 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.49 Xcc-8004.395.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF1750 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.35 GFF2756 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 78
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_4202 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.48 Pf6N2E2_4722 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_1933 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.48 Pf1N1B4_2460 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Paraburkholderia graminis OAS925 0.27 ABIE53_000332 tRNA modification GTPase 0.49 ABIE53_006128 formyltetrahydrofolate deformylase — —
Pseudomonas putida KT2440 0.27 PP_0005 GTPase 0.46 PP_0327 formyltetrahydrofolate deformylase — —
Castellaniella sp019104865 MT123 0.26 ABCV34_RS11895 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.49 ABCV34_RS00645 formyltetrahydrofolate deformylase — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_1582 trmE tRNA modification GTPase TrmE 0.40 Synpcc7942_1008 purU formyltetrahydrofolate deformylase — —

Not shown: 66 genomes with orthologs for Atu2832 only; 0 genomes with orthologs for Atu2464 only