Conservation of cofitness between Sama_0255 and Sama_1004 in Shewanella amazonensis SB2B

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0255 acetylornithine deacetylase (RefSeq) 1.0 Sama_1004 U32 family peptidase (RefSeq) 0.51 1
Shewanella loihica PV-4 0.76 Shew_0201 acetylornithine deacetylase (RefSeq) 0.84 Shew_2783 peptidase U32 (RefSeq) low > 60
Escherichia coli BW25113 0.58 b3957 argE acetylornithine deacetylase (NCBI) 0.69 b2081 yegQ predicted peptidase (NCBI) low > 76
Escherichia coli ECOR27 0.58 NOLOHH_05735 argE acetylornithine deacetylase 0.69 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 75
Enterobacter sp. TBS_079 0.58 MPMX20_04523 Acetylornithine deacetylase 0.69 MPMX20_03067 23S rRNA 5-hydroxycytidine synthase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_04093 Acetylornithine deacetylase 0.69 OHPLBJKB_01623 putative protease YdcP low > 73
Escherichia coli Nissle 1917 0.58 ECOLIN_RS22840 acetylornithine deacetylase 0.69 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ low > 55
Escherichia fergusonii Becca 0.58 EFB2_04657 Acetylornithine deacetylase 0.69 EFB2_01770 23S rRNA 5-hydroxycytidine synthase low > 86
Escherichia coli BL21 0.58 ECD_03842 acetylornithine deacetylase 0.69 ECD_01986 putative peptidase low > 61
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4419 acetylornithine deacetylase (ArgE) 0.69 EX28DRAFT_0478 Collagenase and related proteases low > 76
Escherichia coli ECOR38 0.58 HEPCGN_12235 argE acetylornithine deacetylase 0.69 HEPCGN_02845 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 87
Escherichia coli ECRC62 0.57 BNILDI_05790 argE acetylornithine deacetylase 0.69 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF2343 Acetylornithine deacetylase (EC 3.5.1.16) 0.69 GFF3846 Putative protease low > 78
Escherichia coli ECRC102 0.57 NIAGMN_11340 argE acetylornithine deacetylase 0.69 NIAGMN_22110 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli ECRC98 0.57 JDDGAC_17215 argE acetylornithine deacetylase 0.69 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 86
Escherichia coli ECRC101 0.57 MCAODC_04090 argE acetylornithine deacetylase 0.69 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 87
Pectobacterium carotovorum WPP14 0.57 HER17_RS20635 acetylornithine deacetylase 0.72 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ low > 75
Escherichia coli ECRC99 0.57 KEDOAH_14570 argE acetylornithine deacetylase 0.69 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli ECRC100 0.57 OKFHMN_13590 argE acetylornithine deacetylase 0.69 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 80
Serratia liquefaciens MT49 0.57 IAI46_24520 acetylornithine deacetylase 0.73 IAI46_19015 tRNA 5-hydroxyuridine modification protein YegQ low > 86
Klebsiella michiganensis M5al 0.57 BWI76_RS00840 acetylornithine deacetylase 0.70 BWI76_RS19280 U32 family peptidase low > 92
Rahnella sp. WP5 0.56 EX31_RS14195 acetylornithine deacetylase 0.71 EX31_RS20325 tRNA 5-hydroxyuridine modification protein YegQ low > 89
Dickeya dianthicola ME23 0.56 DZA65_RS00930 acetylornithine deacetylase 0.72 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ low > 75
Dickeya dianthicola 67-19 0.56 HGI48_RS00870 acetylornithine deacetylase 0.71 HGI48_RS15375 tRNA 5-hydroxyuridine modification protein YegQ low > 71
Dickeya dadantii 3937 0.56 DDA3937_RS20355 acetylornithine deacetylase 0.73 DDA3937_RS15295 tRNA 5-hydroxyuridine modification protein YegQ low > 74
Pantoea sp. MT58 0.55 IAI47_00900 acetylornithine deacetylase 0.71 IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ low > 76
Erwinia tracheiphila SCR3 0.55 LU632_RS19620 argE acetylornithine deacetylase 0.65 LU632_RS08665 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 74
Pseudomonas stutzeri RCH2 0.50 Psest_4001 acetylornithine deacetylase (ArgE) 0.69 Psest_4096 Collagenase and related proteases low > 67
Pseudomonas sp. RS175 0.49 PFR28_04309 Acetylornithine deacetylase 0.66 PFR28_02843 hypothetical protein low > 88
Pseudomonas putida KT2440 0.49 PP_5186 acetylornithine deacetylase 0.65 PP_2206 putative peptidase low > 96
Marinobacter adhaerens HP15 0.49 HP15_3315 acetylornithine deacetylase (ArgE) 0.57 HP15_2983 peptidase, U32 family low > 73
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_4496 Acetylornithine deacetylase (EC 3.5.1.16) 0.66 Pf6N2E2_45 Putative protease low > 103
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_2242 Acetylornithine deacetylase (EC 3.5.1.16) 0.66 Pf1N1B4_3925 Putative protease low > 87
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_13080 acetylornithine deacetylase 0.66 AO356_21300 protease low > 104
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_912 Acetylornithine deacetylase (EC 3.5.1.16) 0.66 PfGW456L13_2485 Putative protease low > 87
Pseudomonas simiae WCS417 0.48 PS417_27200 acetylornithine deacetylase 0.68 PS417_10300 protease low > 88
Pseudomonas fluorescens SBW25 0.47 PFLU_RS28860 acetylornithine deacetylase 0.68 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS28860 acetylornithine deacetylase 0.68 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ low > 109
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_08690 acetylornithine deacetylase 0.66 AO353_19800 protease low > 101
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_13385 acetylornithine deacetylase 0.69 CSW01_03750 U32 family peptidase low > 62
Pseudomonas sp. S08-1 0.46 OH686_11125 acetylornithine deacetylase (ArgE) 0.65 OH686_13055 Uncharacterized protease YegQ low > 80
Acidovorax sp. GW101-3H11 0.23 Ac3H11_4519 Acetylornithine deacetylase (EC 3.5.1.16) 0.57 Ac3H11_3295 Probable protease (EC 3.4.24.3) low > 79

Not shown: 33 genomes with orthologs for Sama_0255 only; 9 genomes with orthologs for Sama_1004 only