Conservation of cofitness between Sama_0176 and Sama_0367 in Shewanella amazonensis SB2B

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0176 general secretion pathway protein K (RefSeq) 1.0 Sama_0367 prepilin peptidase (RefSeq) 0.78 5
Shewanella sp. ANA-3 0.76 Shewana3_0158 general secretion pathway protein K (RefSeq) 0.74 Shewana3_0417 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A (RefSeq) 0.73 13
Shewanella oneidensis MR-1 0.76 SO0173 gspK general secretion pathway protein K (NCBI ptt file) 0.73 SO0414 pilD type 4 prepilin-like proteins leader peptide processing enzyme (NCBI ptt file) 0.81 10
Shewanella loihica PV-4 0.74 Shew_3612 general secretion pathway protein K (RefSeq) 0.68 Shew_3440 prepilin peptidase (RefSeq) 0.33 35
Alteromonas macleodii MIT1002 0.31 MIT1002_03983 Putative general secretion pathway protein K 0.48 MIT1002_03011 Pectic enzymes secretion protein OutO — —
Dickeya dianthicola 67-19 0.30 HGI48_RS14700 type II secretion system minor pseudopilin GspK 0.35 HGI48_RS14685 prepilin peptidase low > 71
Dickeya dadantii 3937 0.30 DDA3937_RS14765 type II secretion system minor pseudopilin GspK 0.35 DDA3937_RS14750 prepilin peptidase low > 74
Dickeya dianthicola ME23 0.29 DZA65_RS15645 type II secretion system minor pseudopilin GspK 0.35 DZA65_RS15630 prepilin peptidase low > 75
Pectobacterium carotovorum WPP14 0.29 HER17_RS06720 type II secretion system minor pseudopilin GspK 0.33 HER17_RS06740 A24 family peptidase low > 75
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_13755 type II secretion system protein K 0.46 CSW01_12285 prepilin peptidase — —
Escherichia coli BL21 0.26 ECD_02831 putative type II secretion protein GspK 0.22 ECD_02841 bifunctional prepilin leader peptidase/ methylase 0.96 7
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_00746 Putative type II secretion system protein K 0.22 OHPLBJKB_00736 Leader peptidase PppA low > 73
Escherichia fergusonii Becca 0.24 EFB2_00852 Putative type II secretion system protein K 0.22 EFB2_00842 Prepilin peptidase PppA low > 86
Escherichia coli ECOR38 0.24 HEPCGN_18085 gspK general secretion pathway protein K 0.23 HEPCGN_18035 pppA prepilin peptidase PppA 0.94 6
Escherichia coli ECOR27 0.24 NOLOHH_11010 gspK general secretion pathway protein K 0.23 NOLOHH_24515 prepilin peptidase — —
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_0696 Type II secretory pathway, component PulK 0.46 B158DRAFT_2140 type 4 prepilin peptidase 1 (EC:3.4.23.43). Aspartic peptidase. MEROPS family A24A — —
Pseudomonas stutzeri RCH2 0.22 Psest_4196 Type II secretory pathway, component PulK 0.47 Psest_3286 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases low > 67
Escherichia coli ECRC101 0.22 MCAODC_15300 gspK type II secretion system minor pseudopilin GspK 0.29 MCAODC_15315 pulO prepilin peptidase — —
Escherichia coli ECRC102 0.22 NIAGMN_28570 gspK type II secretion system minor pseudopilin GspK 0.29 NIAGMN_28555 pulO prepilin peptidase — —
Escherichia coli ECRC101 0.22 OKFHMN_00250 gspK type II secretion system minor pseudopilin GspK 0.29 OKFHMN_00235 pulO prepilin peptidase — —
Escherichia coli ECRC98 0.22 JDDGAC_30330 gspK type II secretion system minor pseudopilin GspK 0.29 JDDGAC_30345 pulO prepilin peptidase — —
Marinobacter adhaerens HP15 0.21 HP15_1608 general secretion pathway protein K-like protein 0.48 HP15_2411 type IV pilus prepilin peptidase PilD 0.67 9
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.949.1 General secretion pathway protein K 0.38 Xcc-8004.1345.1 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) — —
Pseudomonas sp. S08-1 0.21 OH686_11755 General secretion pathway protein K 0.49 OH686_16495 Leader peptidase (Prepilin peptidase) / N-methyltransferase low > 80
Klebsiella michiganensis M5al 0.20 BWI76_RS05055 type II secretion system protein K 0.32 BWI76_RS05035 prepilin peptidase — —
Escherichia coli BW25113 0.19 b3332 gspK general secretory pathway component, cryptic (NCBI) 0.22 b2972 b2972 putative peptidase (VIMSS) low > 76
Acinetobacter radioresistens SK82 0.19 MPMX26_01229 Type II secretion system protein K 0.42 MPMX26_00244 Type 4 prepilin-like proteins leader peptide-processing enzyme — —
Rahnella sp. WP5 0.16 EX31_RS16200 type II secretion system minor pseudopilin GspK 0.31 EX31_RS16215 prepilin peptidase low > 89
Enterobacter asburiae PDN3 0.15 EX28DRAFT_2072 Type II secretory pathway, component PulK 0.26 EX28DRAFT_2069 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases low > 76
Pseudomonas putida KT2440 0.13 PP_1042 Type II secretion system protein K 0.46 PP_0632 leader peptidase/N-methyltransferase low > 96
Pseudomonas fluorescens FW300-N2E3 0.11 AO353_12580 type II secretory protein PulK 0.41 AO353_14320 methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.10 AO356_24775 HxcX atypical pseudopilin 0.42 AO356_16005 methyltransferase low > 104
Ralstonia sp. UNC404CL21Col 0.09 ABZR87_RS03430 type II secretion system minor pseudopilin GspK 0.42 ABZR87_RS01855 A24 family peptidase 0.70 12
Pseudomonas fluorescens SBW25 0.09 PFLU_RS15765 general secretion pathway protein GspK 0.48 PFLU_RS03940 prepilin peptidase low > 109
Pseudomonas fluorescens SBW25-INTG 0.09 PFLU_RS15765 general secretion pathway protein GspK 0.48 PFLU_RS03940 prepilin peptidase low > 109
Cupriavidus basilensis FW507-4G11 0.09 RR42_RS19500 general secretion pathway protein GspK 0.40 RR42_RS17990 methyltransferase 0.91 10
Pseudomonas fluorescens FW300-N2E2 0.08 Pf6N2E2_648 General secretion pathway protein K 0.42 Pf6N2E2_5140 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) low > 103
Pseudomonas simiae WCS417 0.08 PS417_11280 HxcX atypical pseudopilin 0.47 PS417_03895 methyltransferase low > 88

Not shown: 2 genomes with orthologs for Sama_0176 only; 30 genomes with orthologs for Sama_0367 only