Conservation of cofitness between b0487 and b4479 in Escherichia coli BW25113

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0487 cueR DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) 1.0 b4479 dgoR predicted DNA-binding transcriptional regulator (NCBI) 0.18 4
Escherichia coli ECRC62 1.00 BNILDI_22420 cueR Cu(I)-responsive transcriptional regulator 1.00 BNILDI_04335 dgoR D-galactonate utilization transcriptional regulator DgoR — —
Escherichia coli BL21 1.00 ECD_00438 copper-responsive regulon transcriptional regulator 1.00 ECD_03578 D-galactonate catabolism operon transcriptional repressor low > 60
Escherichia coli ECOR27 1.00 NOLOHH_01000 cueR Cu(I)-responsive transcriptional regulator 1.00 NOLOHH_07195 dgoR D-galactonate utilization transcriptional regulator DgoR low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03187 HTH-type transcriptional regulator CueR 1.00 OHPLBJKB_00008 HTH-type transcriptional regulator LutR low > 73
Escherichia coli Nissle 1917 0.99 ECOLIN_RS02880 Cu(I)-responsive transcriptional regulator 1.00 ECOLIN_RS21280 D-galactonate utilization transcriptional regulator DgoR — —
Escherichia fergusonii Becca 0.98 EFB2_03572 HTH-type transcriptional regulator CueR 1.00 EFB2_00008 HTH-type transcriptional regulator LutR low > 86
Escherichia coli ECOR38 0.96 HEPCGN_06670 cueR Cu(I)-responsive transcriptional regulator 1.00 HEPCGN_13760 dgoR D-galactonate utilization transcriptional regulator DgoR low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF4405 HTH-type transcriptional regulator cueR 0.96 GFF1762 D-Galactonate repressor DgoR low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_01085 HTH-type transcriptional regulator CueR 0.96 MPMX20_00008 HTH-type transcriptional regulator LutR low > 85
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2473 Cu(I)-responsive transcriptional regulator 0.96 EX28DRAFT_3982 Transcriptional regulators low > 76
Klebsiella michiganensis M5al 0.86 BWI76_RS06910 transcriptional regulator 0.96 BWI76_RS27950 transcriptional regulator low > 92
Rahnella sp. WP5 0.77 EX31_RS22580 Cu(I)-responsive transcriptional regulator 0.82 EX31_RS10335 D-galactonate utilization transcriptional regulator DgoR low > 89
Serratia liquefaciens MT49 0.77 IAI46_05315 Cu(I)-responsive transcriptional regulator 0.26 IAI46_03180 FadR family transcriptional regulator low > 86
Pantoea sp. MT58 0.75 IAI47_14395 Cu(I)-responsive transcriptional regulator 0.71 IAI47_00030 FadR family transcriptional regulator low > 76
Dickeya dianthicola ME23 0.73 DZA65_RS06230 Cu(I)-responsive transcriptional regulator 0.82 DZA65_RS07270 D-galactonate utilization transcriptional regulator DgoR low > 75
Dickeya dianthicola 67-19 0.73 HGI48_RS05895 Cu(I)-responsive transcriptional regulator 0.82 HGI48_RS06925 D-galactonate utilization transcriptional regulator DgoR low > 71
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0653 transcriptional regulator, MerR family 0.23 Psyr_1707 transcriptional regulator, GntR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0653 transcriptional regulator, MerR family 0.23 Psyr_1707 transcriptional regulator, GntR family low > 86
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS23915 Cu(I)-responsive transcriptional regulator 0.25 QEN71_RS16805 FadR/GntR family transcriptional regulator low > 153
Sinorhizobium meliloti 1021 0.44 SM_b21579 MerR family transcriptional regulator 0.22 SM_b20509 transcriptional regulator low > 103
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS06865 MerR family transcriptional regulator 0.29 BPHYT_RS10995 GntR family transcriptional regulator low > 109
Pseudomonas sp. RS175 0.42 PFR28_05243 HTH-type transcriptional regulator HmrR 0.25 PFR28_01578 HTH-type transcriptional regulator LutR low > 88
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_25 Cu(I)-responsive transcriptional regulator 0.26 PfGW456L13_3321 Transcriptional regulator of the arabinose operon in Shewanella, GntR family low > 87
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_3488 Cu(I)-responsive transcriptional regulator 0.24 Pf6N2E2_608 Transcriptional regulator of the arabinose operon in Shewanella, GntR family low > 103
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_08070 transcriptional regulator 0.24 AO356_24580 GntR family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_1263 Cu(I)-responsive transcriptional regulator 0.26 Pf1N1B4_4620 Transcriptional regulator of the arabinose operon in Shewanella, GntR family — —
Pseudomonas simiae WCS417 0.41 PS417_03155 transcriptional regulator 0.23 PS417_10995 GntR family transcriptional regulator low > 88
Castellaniella sp019104865 MT123 0.41 ABCV34_RS04205 Cu(I)-responsive transcriptional regulator 0.17 ABCV34_RS07385 FadR/GntR family transcriptional regulator low > 48
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS03235 Cu(I)-responsive transcriptional regulator 0.23 PFLU_RS11620 FadR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.40 PFLU_RS03235 Cu(I)-responsive transcriptional regulator 0.23 PFLU_RS11620 FadR family transcriptional regulator low > 109
Variovorax sp. OAS795 0.37 ABID97_RS02815 Cu(I)-responsive transcriptional regulator 0.28 ABID97_RS21200 FadR/GntR family transcriptional regulator — —
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS01745 heavy metal-responsive transcriptional regulator 0.24 ABZR86_RS03660 FadR/GntR family transcriptional regulator low > 74
Variovorax sp. SCN45 0.36 GFF3315 Cu(I)-responsive transcriptional regulator 0.28 GFF6773 Transcriptional regulator, GntR family low > 127
Shewanella sp. ANA-3 0.34 Shewana3_2762 MerR family transcriptional regulator (RefSeq) 0.23 Shewana3_2068 GntR family transcriptional regulator (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_03178 MerR-family transcriptional regulator 0.23 CCNA_00824 GntR-family transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.25 CCNA_03178 MerR-family transcriptional regulator 0.23 CCNA_00824 GntR-family transcriptional regulator low > 66

Not shown: 36 genomes with orthologs for b0487 only; 6 genomes with orthologs for b4479 only