Conservation of cofitness between b3564 and b3569 in Escherichia coli BW25113

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3564 xylB xylulokinase (NCBI) 1.0 b3569 xylR DNA-binding transcriptional activator, xylose-binding (NCBI) 0.72 2
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00140 Xylulose kinase 1.00 OHPLBJKB_00135 Xylose operon regulatory protein low > 73
Escherichia coli BL21 1.00 ECD_03416 xylulokinase 1.00 ECD_03421 xylose divergent operon transcriptional activator low > 60
Escherichia coli ECOR27 0.99 NOLOHH_07905 xylB xylulokinase 1.00 NOLOHH_07880 xylR DNA-binding transcriptional regulator XylR low > 57
Escherichia coli ECRC101 0.99 OKFHMN_15960 xylB xylulokinase 1.00 OKFHMN_15935 xylR DNA-binding transcriptional regulator XylR — —
Escherichia coli ECRC101 0.99 MCAODC_06475 xylB xylulokinase 1.00 MCAODC_06450 xylR DNA-binding transcriptional regulator XylR — —
Escherichia coli ECRC99 0.99 KEDOAH_12190 xylB xylulokinase 1.00 KEDOAH_12215 xylR DNA-binding transcriptional regulator XylR — —
Escherichia coli ECRC102 0.99 NIAGMN_13720 xylB xylulokinase 1.00 NIAGMN_13695 xylR DNA-binding transcriptional regulator XylR — —
Escherichia coli ECRC98 0.99 JDDGAC_19590 xylB xylulokinase 1.00 JDDGAC_19565 xylR DNA-binding transcriptional regulator XylR — —
Escherichia coli ECRC62 0.99 BNILDI_03640 xylB xylulokinase 1.00 BNILDI_03665 xylR DNA-binding transcriptional regulator XylR — —
Escherichia fergusonii Becca 0.99 EFB2_00243 Xylulose kinase 1.00 EFB2_00238 Xylose operon regulatory protein low > 86
Escherichia coli ECOR38 0.98 HEPCGN_14845 xylB xylulokinase 1.00 HEPCGN_14820 xylR DNA-binding transcriptional regulator XylR low > 85
Escherichia coli Nissle 1917 0.98 ECOLIN_RS20385 xylulokinase 1.00 ECOLIN_RS20410 D-xylose utilization transcriptional activator XylR low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF445 Xylulose kinase (EC 2.7.1.17) 0.91 GFF442 Xylose activator XylR (AraC family) low > 78
Klebsiella michiganensis M5al 0.81 BWI76_RS27020 Xylulose kinase (EC 2.7.1.17) (from data) 0.89 BWI76_RS27045 XylR family transcriptional regulator 0.42 2
Enterobacter sp. TBS_079 0.80 MPMX20_00166 Xylulose kinase 0.91 MPMX20_00161 Xylose operon regulatory protein 0.92 2
Enterobacter asburiae PDN3 0.80 EX28DRAFT_3829 D-xylulose kinase 0.91 EX28DRAFT_3834 Transcriptional regulators low > 76
Pectobacterium carotovorum WPP14 0.73 HER17_RS21090 xylulokinase 0.82 HER17_RS21065 XylR family transcriptional regulator low > 75
Rahnella sp. WP5 0.72 EX31_RS09770 xylulokinase 0.84 EX31_RS09745 XylR family transcriptional regulator 0.80 2
Dickeya dadantii 3937 0.71 DDA3937_RS20940 xylulokinase 0.81 DDA3937_RS20915 DNA-binding transcriptional regulator low > 74
Serratia liquefaciens MT49 0.70 IAI46_00275 xylulokinase 0.82 IAI46_00300 DNA-binding transcriptional regulator low > 86
Dickeya dianthicola 67-19 0.68 HGI48_RS00305 xylulokinase 0.81 HGI48_RS00330 XylR family transcriptional regulator low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS00300 xylulokinase 0.81 DZA65_RS00330 DNA-binding transcriptional regulator low > 75
Pantoea sp. MT58 0.67 IAI47_00200 xylulokinase 0.84 IAI47_00175 XylR family transcriptional regulator low > 76
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS16080 xylulokinase 0.46 BPHYT_RS32830 AraC family transcriptional regulator low > 109
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14425 xylulokinase 0.49 ABZR86_RS14435 DNA-binding transcriptional regulator low > 74
Paraburkholderia graminis OAS925 0.51 ABIE53_003390 xylulokinase 0.46 ABIE53_004928 LacI family transcriptional regulator low > 113
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04153 xylulokinase 0.47 H281DRAFT_03875 transcriptional regulator, AraC family low > 103
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS02625 xylulokinase 0.49 QEN71_RS25880 DNA-binding transcriptional regulator 0.49 12
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS18660 xylulokinase 0.44 ABZR87_RS18215 DNA-binding transcriptional regulator low > 80
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS02220 xylulokinase 0.44 HSERO_RS22455 AraC family transcriptional regulator low > 78
Pseudomonas simiae WCS417 0.40 PS417_13655 xylulose kinase 0.45 PS417_10950 AraC family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.40 PFLU_RS15190 xylulokinase 0.43 PFLU_RS11310 DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS15190 xylulokinase 0.43 PFLU_RS11310 DNA-binding transcriptional regulator low > 109
Bacteroides thetaiotaomicron VPI-5482 0.24 BT4423 xylulose kinase (NCBI ptt file) 0.17 BT3609 transcriptional regulator (NCBI ptt file) low > 81
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_2435 Xylulokinase 0.45 Psyr_2882 transcriptional regulator, AraC family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_2435 Xylulokinase 0.45 Psyr_2882 transcriptional regulator, AraC family low > 86
Pseudomonas sp. RS175 0.22 PFR28_01708 Xylulose kinase 0.44 PFR28_02347 Xylose operon regulatory protein 0.58 8
Pseudomonas fluorescens FW300-N2C3 0.22 AO356_27695 Xylulose kinase (EC 2.7.1.17) (from data) 0.44 AO356_28495 AraC family transcriptional regulator 0.80 1
Pseudomonas fluorescens FW300-N2E2 0.22 Pf6N2E2_805 Xylulose kinase (EC 2.7.1.17) (from data) 0.44 Pf6N2E2_1453 Xylose activator XylR (AraC family) low > 103
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_1875 xylulokinase (EC 2.7.1.17) (from data) 0.19 Echvi_3418 Transcriptional regulators low > 79
Bacteroides ovatus ATCC 8483 0.17 BACOVA_02533 carbohydrate kinase, FGGY family protein 0.17 BACOVA_03406 transcriptional regulator, AraC family low > 94

Not shown: 27 genomes with orthologs for b3564 only; 0 genomes with orthologs for b3569 only