Conservation of cofitness between b2498 and b3387 in Escherichia coli BW25113

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2498 upp uracil phosphoribosyltransferase (VIMSS) 1.0 b3387 dam DNA adenine methylase (NCBI) 0.23 13
Escherichia coli ECRC62 1.00 BNILDI_12275 upp uracil phosphoribosyltransferase 1.00 BNILDI_02605 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECOR27 1.00 NOLOHH_13465 upp uracil phosphoribosyltransferase 1.00 NOLOHH_08915 dam adenine-specific DNA-methyltransferase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14185 uracil phosphoribosyltransferase 1.00 ECOLIN_RS19350 adenine-specific DNA-methyltransferase low > 52
Escherichia coli BL21 1.00 ECD_02390 uracil phosphoribosyltransferase 1.00 ECD_03239 DNA adenine methyltransferase — —
Escherichia fergusonii Becca 1.00 EFB2_01400 Uracil phosphoribosyltransferase 1.00 EFB2_00441 DNA adenine methylase — —
Escherichia coli ECRC101 1.00 MCAODC_12345 upp uracil phosphoribosyltransferase 1.00 MCAODC_07655 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC101 1.00 OKFHMN_21815 upp uracil phosphoribosyltransferase 1.00 OKFHMN_17125 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECOR38 1.00 HEPCGN_20980 upp uracil phosphoribosyltransferase 1.00 HEPCGN_15945 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC98 1.00 JDDGAC_25760 upp uracil phosphoribosyltransferase 1.00 JDDGAC_20755 dam adenine-specific DNA-methyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01228 Uracil phosphoribosyltransferase 1.00 OHPLBJKB_00316 DNA adenine methylase low > 73
Escherichia coli ECRC102 1.00 NIAGMN_19585 upp uracil phosphoribosyltransferase 1.00 NIAGMN_14895 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC99 1.00 KEDOAH_06405 upp uracil phosphoribosyltransferase 1.00 KEDOAH_11015 dam adenine-specific DNA-methyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.99 GFF2171 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.93 GFF632 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) low > 78
Klebsiella michiganensis M5al 0.96 BWI76_RS20945 uracil phosphoribosyltransferase 0.81 BWI76_RS26075 DNA adenine methylase low > 92
Enterobacter sp. TBS_079 0.96 MPMX20_03352 Uracil phosphoribosyltransferase 0.79 MPMX20_04276 DNA adenine methylase low > 85
Enterobacter asburiae PDN3 0.96 EX28DRAFT_0170 uracil phosphoribosyltransferase (EC 2.4.2.9) 0.79 EX28DRAFT_4155 DNA adenine methylase (dam) 0.53 67
Dickeya dianthicola 67-19 0.95 HGI48_RS06075 uracil phosphoribosyltransferase 0.63 HGI48_RS19665 adenine-specific DNA-methyltransferase — —
Dickeya dadantii 3937 0.95 DDA3937_RS06030 uracil phosphoribosyltransferase 0.65 DDA3937_RS19535 adenine-specific DNA-methyltransferase — —
Dickeya dianthicola ME23 0.95 DZA65_RS06425 uracil phosphoribosyltransferase 0.64 DZA65_RS20750 adenine-specific DNA-methyltransferase — —
Pantoea sp. MT58 0.95 IAI47_05185 uracil phosphoribosyltransferase 0.66 IAI47_01905 adenine-specific DNA-methyltransferase — —
Pectobacterium carotovorum WPP14 0.94 HER17_RS15460 uracil phosphoribosyltransferase 0.68 HER17_RS01790 adenine-specific DNA-methyltransferase — —
Rahnella sp. WP5 0.94 EX31_RS22700 uracil phosphoribosyltransferase 0.67 EX31_RS04710 adenine-specific DNA-methyltransferase low > 89
Serratia liquefaciens MT49 0.94 IAI46_18880 uracil phosphoribosyltransferase 0.70 IAI46_23690 adenine-specific DNA-methyltransferase low > 86
Erwinia tracheiphila SCR3 0.93 LU632_RS08280 upp uracil phosphoribosyltransferase 0.69 LU632_RS22855 dam adenine-specific DNA-methyltransferase — —
Shewanella loihica PV-4 0.89 Shew_1514 upp uracil phosphoribosyltransferase (RefSeq) 0.57 Shew_0216 DNA adenine methylase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.89 CSW01_11345 uracil phosphoribosyltransferase 0.62 CSW01_13290 DNA adenine methylase — —
Shewanella amazonensis SB2B 0.88 Sama_2096 upp uracil phosphoribosyltransferase (RefSeq) 0.59 Sama_3365 site-specific DNA-methyltransferase (adenine-specific) (RefSeq) low > 62
Shewanella sp. ANA-3 0.88 Shewana3_2544 upp uracil phosphoribosyltransferase (RefSeq) 0.57 Shewana3_3891 DNA adenine methylase (RefSeq) — —
Shewanella oneidensis MR-1 0.88 SO2759 upp uracil phosphoribosyltransferase (NCBI ptt file) 0.58 SO0289 dam DNA adenine methylase (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.72 MIT1002_02893 Uracil phosphoribosyltransferase 0.56 MIT1002_00445 DNA adenine methylase — —
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_04523 uracil phosphoribosyltransferase 0.17 H281DRAFT_02258 DNA adenine methylase low > 103
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS15395 uracil phosphoribosyltransferase 0.19 ABZR87_RS05395 Dam family site-specific DNA-(adenine-N6)-methyltransferase low > 80
Synechococcus elongatus PCC 7942 0.39 Synpcc7942_1715 upp uracil phosphoribosyltransferase 0.23 Synpcc7942_1790 mbpA DNA adenine methylase — —
Methanococcus maripaludis S2 0.26 MMP_RS03565 uracil phosphoribosyltransferase 0.23 MMP_RS03845 DNA adenine methylase low > 25
Methanococcus maripaludis JJ 0.26 MMJJ_RS01490 uracil phosphoribosyltransferase 0.23 MMJJ_RS01205 DNA adenine methylase low > 28
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_0597 Uracil phosphoribosyltransferase 0.21 Echvi_1408 DNA adenine methylase (dam) low > 79
Bacteroides ovatus ATCC 8483 0.23 BACOVA_02012 putative uracil phosphoribosyltransferase 0.23 BACOVA_02878 DNA adenine methylase — —
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS10070 uracil phosphoribosyltransferase 0.21 HMPREF1058_RS05700 Dam family site-specific DNA-(adenine-N6)-methyltransferase low > 67
Bacteroides stercoris CC31F 0.22 HMPREF1181_RS01165 uracil phosphoribosyltransferase 0.22 HMPREF1181_RS11040 DNA adenine methylase — —

Not shown: 59 genomes with orthologs for b2498 only; 1 genomes with orthologs for b3387 only