Conservation of cofitness between b3753 and b3229 in Escherichia coli BW25113

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) 1.0 b3229 sspA stringent starvation protein A (NCBI) 0.50 15
Escherichia fergusonii Becca 1.00 EFB2_04880 Ribose operon repressor 1.00 EFB2_00601 Stringent starvation protein A low > 86
Escherichia coli ECOR38 1.00 HEPCGN_13435 rbsR ribose operon transcriptional repressor RbsR 1.00 HEPCGN_16705 sspA stringent starvation protein A low > 85
Escherichia coli ECRC101 1.00 MCAODC_05230 rbsR ribose operon transcriptional repressor RbsR 1.00 MCAODC_08350 sspA stringent starvation protein A — —
Escherichia coli ECRC102 1.00 NIAGMN_12480 rbsR ribose operon transcriptional repressor RbsR 1.00 NIAGMN_15590 sspA stringent starvation protein A — —
Escherichia coli ECRC98 1.00 JDDGAC_18345 rbsR ribose operon transcriptional repressor RbsR 1.00 JDDGAC_21455 sspA stringent starvation protein A — —
Escherichia coli ECOR27 1.00 NOLOHH_06860 rbsR ribose operon transcriptional repressor RbsR 1.00 NOLOHH_09630 sspA stringent starvation protein A low > 57
Escherichia coli ECRC99 1.00 KEDOAH_13425 rbsR ribose operon transcriptional repressor RbsR 1.00 KEDOAH_10320 sspA stringent starvation protein A — —
Escherichia coli ECRC101 1.00 OKFHMN_14725 rbsR ribose operon transcriptional repressor RbsR 1.00 OKFHMN_17830 sspA stringent starvation protein A — —
Escherichia coli ECRC62 1.00 BNILDI_04665 rbsR ribose operon transcriptional repressor RbsR 1.00 BNILDI_01905 sspA stringent starvation protein A — —
Escherichia coli BL21 0.99 ECD_03639 transcriptional repressor of ribose metabolism 1.00 ECD_03089 stringent starvation protein A, phage P1 late gene activator, RNAP-associated acid-resistance protein, inactive glutathione S-transferase-like protein low > 60
Escherichia coli Nissle 1917 0.96 ECOLIN_RS21575 ribose operon transcriptional repressor RbsR 1.00 ECOLIN_RS18520 stringent starvation protein SspA low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF1704 Ribose operon repressor 0.98 GFF2968 Stringent starvation protein A low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_4029 transcriptional regulator, LacI family 0.96 EX28DRAFT_3278 Glutathione S-transferase low > 76
Enterobacter sp. TBS_079 0.88 MPMX20_04614 Ribose operon repressor 0.96 MPMX20_04133 Stringent starvation protein A low > 85
Klebsiella michiganensis M5al 0.85 BWI76_RS00295 transcriptional regulator RbsR 0.93 BWI76_RS25335 stringent starvation protein A low > 92
Pantoea sp. MT58 0.74 IAI47_00375 ribose operon transcriptional repressor RbsR 0.83 IAI47_17235 stringent starvation protein A 0.52 14
Rahnella sp. WP5 0.73 EX31_RS06195 ribose operon transcriptional repressor RbsR 0.84 EX31_RS12500 stringent starvation protein A 0.50 29
Serratia liquefaciens MT49 0.73 IAI46_25050 ribose operon transcriptional repressor RbsR 0.84 IAI46_22365 stringent starvation protein A low > 86
Dickeya dadantii 3937 0.71 DDA3937_RS00055 ribose operon transcriptional repressor RbsR 0.84 DDA3937_RS01645 stringent starvation protein A low > 74
Pectobacterium carotovorum WPP14 0.71 HER17_RS21525 ribose operon transcriptional repressor RbsR 0.84 HER17_RS19935 stringent starvation protein A low > 75
Dickeya dianthicola 67-19 0.71 HGI48_RS21310 ribose operon transcriptional repressor RbsR 0.85 HGI48_RS01545 stringent starvation protein A low > 71
Dickeya dianthicola ME23 0.66 DZA65_RS22290 substrate-binding domain-containing protein 0.85 DZA65_RS01615 stringent starvation protein A low > 75
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_14670 transcriptional repressor PurR 0.74 CSW01_03060 stringent starvation protein A — —
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS11495 LacI family transcription regulator 0.40 HSERO_RS20230 glutathione S-transferase — —
Variovorax sp. OAS795 0.38 ABID97_RS24770 LacI family DNA-binding transcriptional regulator 0.39 ABID97_RS22970 glutathione S-transferase N-terminal domain-containing protein — —
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_6032 Ribose operon repressor 0.54 Pf1N1B4_959 Stringent starvation protein A low > 87
Variovorax sp. SCN45 0.37 GFF2137 Ribose operon repressor 0.40 GFF6697 Stringent starvation protein A — —
Acidovorax sp. GW101-3H11 0.37 Ac3H11_1840 Ribose operon repressor 0.40 Ac3H11_4753 Stringent starvation protein A — —
Pseudomonas sp. RS175 0.37 PFR28_02734 Ribose operon repressor 0.54 PFR28_03603 Stringent starvation protein A low > 88
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_3909 Ribose operon repressor 0.54 PfGW456L13_1637 Stringent starvation protein A low > 87
Paraburkholderia graminis OAS925 0.36 ABIE53_002322 LacI family transcriptional regulator 0.39 ABIE53_003682 RNA polymerase-associated protein — —
Azospirillum sp. SherDot2 0.32 MPMX19_02768 Ribose operon repressor 0.13 MPMX19_00253 FtsZ-localized protein A low > 112
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_15435 LacI family transcriptional regulator 0.46 OKGIIK_03020 gstA stringent starvation protein A low > 52
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS08670 LacI family transcriptional regulator 0.46 LRK54_RS13780 glutathione S-transferase N-terminal domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.26 LRK55_RS08435 LacI family DNA-binding transcriptional regulator 0.46 LRK55_RS13495 glutathione S-transferase N-terminal domain-containing protein low > 63
Hydrogenophaga sp. GW460-11-11-14-LB1 0.25 GFF4454 Transcriptional regulator, LacI family 0.39 GFF1292 Stringent starvation protein A — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_1462 Transcriptional regulators 0.14 Ga0059261_1536 Glutathione S-transferase low > 68
Shewanella oneidensis MR-1 0.23 SO3516 transcriptional regulator, LacI family (NCBI ptt file) 0.69 SO0611 sspA stringent starvation protein a (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.22 Shew_1870 LacI family transcription regulator (RefSeq) 0.70 Shew_0573 sspA stringent starvation protein A (RefSeq) — —
Shewanella sp. ANA-3 0.22 Shewana3_3122 LacI family transcription regulator (RefSeq) 0.70 Shewana3_0604 sspA stringent starvation protein A (RefSeq) — —

Not shown: 4 genomes with orthologs for b3753 only; 35 genomes with orthologs for b3229 only